HsaINT0065152 @ hg19
Intron Retention
Gene
ENSG00000161791 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:23698]
Coordinates
chr12:50045165-50045995:-
Coord C1 exon
chr12:50045716-50045995
Coord A exon
chr12:50045234-50045715
Coord C2 exon
chr12:50045165-50045233
Length
482 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GTCATTTCTTCTTCCCCCAGACA
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAGACATATGAGAACACAAGCCACCAGGTGCACACCCTGCGGAGGCTCATTAAAGAGAAGGAGGAGGCCTTTCAGCGTCGATGTCATTTGGAGCCAAATGTCCGGGGCCTGGAGTCTGTGGACAGTGAGGCCCTGGCCAGAGTAGGCCCTGCAGAGCTGAGTGAGGGCATGCCACCCTCCGACCTGGACCTTCTGGCTCCAGCCCCACCCCCTGAGGAGGTCCTGCCTCTTCCTCCACCACCAGCTCCGCCCTTGCCCCCTCCACCTCCCCCATTACCAG
Seq A exon
GTAACCACGACGACCCCTGGGAGCCAACAGGGGCAGCCTCTTTGTGGGGACCAAAACTGTAGTCAGCAGTGTCTTCCTCAGGGAGAAGCTGGGAAAATGGCATTATCTGAGGACTTGGAGGGATATAAAATCAGGGTGAGGGAGGCCTGGAATCTGAGGGAAGCTCAAGTTATCAGCACAGGGATGCCCAAAGGCAGATGTGGACCTGTTTTAAGGATCATAAAGATGTTGCTCCCAATTCCTTTGAAGACAGCCAAGGAGAGGCTTAGACTGTAGCCATAGAAACTGGGTCAGAGACCAGCAACAACTGCCCTGTCAGAGTTAGATTTCTGGGAGCAGCTTGAGCAGAGTTCATGTAGGCTCCTTCTCTGAGAGTTTTTTTTTTTTTTAACTCTCAGAGAAGGTGGGACAGGCAGAGGGGAGGGAAGCCTATGAAGAGTCTCTTGACGCCTGGGTCACTGTGTCATTTCTTCTTCCCCCAG
Seq C2 exon
ACAAGTGTCCCCCAGCCCCACCTCTCCCTGGTGCTGCACCCTCTGTGGTGTTGACAGTGGGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791-FMNL3:NM_175736:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(19.8=42.6),PF061486=COG2=PD(22.8=39.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATGAGAACACAAGCCACCA
R:
CAGGCCCACTGTCAACACC
Band lengths:
342-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)