RnoINT0061661 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140987273-140988148:-
Coord C1 exon
chr7:140987866-140988148
Coord A exon
chr7:140987342-140987865
Coord C2 exon
chr7:140987273-140987341
Length
524 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ATGGCATTTATTCTTCCCAGACA
3' ss Score
5.58
Exon sequences
Seq C1 exon
GAGACATACGAGAACACAAGCAACCAGGTGCACACCCTTCGGAGGCTCATTAAGGAGAAGGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGAGCCTGGAATCCATGGGTGGGAGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGCTGACTGAAGGCTCGACACCCTCCGACCTGGACCTGCTGGCTCCAGCCCCACCTGCTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCCCCGCCTTTGCCCCCACCCCCTCCTCCACTACCAG
Seq A exon
GTAACTGGGACTTCCAGGCGGGGAGGGGCAGGTTTTTTGTGAGGCCAGGACCATCTTTCTCAGGAAACAGTTGGGAAATAGCATCATTTGAGAGCTAGGAGGGTATCAAGTCAGGATGAGAGGGCTAAGGGAGGACCAGTGTTTGTGGGAAATAGATGAAGGAATGCTGGGAGCAGATTCTGCTTCAAGGATCTCTGAGGGGATGCTCTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTCACTAGGCAAGTGCTCTACCGCTGAGCTAAATCCCCAACTGAGGGGCTGCTCTTAATTATTCTGAAGGCAGCCAAGCGGAGGGCTCAGCTGTGACAGAAGAAACTCCATCAAGGACTAGCTCTGGCTCTCCCCTCAGTGCACTTTTGGGACCAACTTGCCCAGTGTCATAGCACTCCTCTTGGGGTCTCTAAGGAGAGGGAGGCAGGCAGAGTTTGGGCAGCCTGGAGCCTTAGGACTGTGGGTCATAATGGCATTTATTCTTCCCAG
Seq C2 exon
ACAAATGTCCCCCTGCCCCACCTCTTCCTGGTGCTGCTCCTTCTGTGGTGTTGACAGTGGGCCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(19.0=40.0),PF061486=COG2=PD(26.8=47.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAGAACACAAGCAACCAGG
R:
CAGGCCCACTGTCAACACC
Band lengths:
342-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]