MmuINT0065135 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99322812-99323599:-
Coord C1 exon
chr15:99323320-99323599
Coord A exon
chr15:99322881-99323319
Coord C2 exon
chr15:99322812-99322880
Length
439 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ATGGCATTTATTCTTCCCAGACA
3' ss Score
5.58
Exon sequences
Seq C1 exon
GAGACATATGAGAACACAAGCAACCAGGTGCATACTCTTCGGAGGCTCATTAAGGAAAAGGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGGGCCTGGAATCCATGGGCGGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGTTGACTGAAGGCATCCCACCCTCTGACTTGGACCTGCTGGCTCCAGCCCCACCTACTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCTCCCCCTTTGCCTCCGCCCCCTCCTCCACTACCAG
Seq A exon
GTAACTGGGACTTCCAAGCCGGGAGGGGCAGGTTTTTTGTGAGGCCAGTACTGTAGTCAGAAATGTCTTTCTTAGGAAACAGCTGGGAAATAGCATCATTTGAGGGCCAGGAGGATATCAAGTCAGGATGAGAGAGAGGGCTAAGGGAGGACCAGTGTTTGTGGGAAATAGGAATGCTGGGAGCAGATTCTGCTTCAAGGATCTCTGAGGTGCTGCTCTCAATTATTCCTCTGAAGGCCGCCAAACTGAAGGTTAAACTGACAAGAGAAACTCCGTCAGGGACTAGTGCTGGCTCTCCCCTTCAGTATACTTCTAGGATCAACTTGACCAGAGCTTCCATAGCACTCTTCTCTGGGTCTCAAAGGAGAGGGAGGCAGGCAGAGTTTGGGTAGCCTAGAGTCTTAGGACTGTGGGTCACGATGGCATTTATTCTTCCCAG
Seq C2 exon
ACAAGTGTCCCCCTGCCCCACCTCTCCCTGGTGCTGCTCCTTCTGTGGTGTTGACAGTGGGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(18.6=39.4),PF061486=COG2=PD(24.2=42.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACATATGAGAACACAAGCAACC
R:
GCCCACTGTCAACACCACAG
Band lengths:
342-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types