BtaINT0063208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30361212-30361728:+
Coord C1 exon
chr5:30361212-30361288
Coord A exon
chr5:30361289-30361634
Coord C2 exon
chr5:30361635-30361728
Length
346 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTATTTTCCACCCCTTAGGAC
3' ss Score
9.76
Exon sequences
Seq C1 exon
TATGGATTCAACCTGGTCATGTCCCATCCTCATGCTGTCAATGAGATTGCGCTGAGTCTCAACAACAAGAATCCAAG
Seq A exon
GTGAGTTCCTTTCCTCTCCTTTCCTCCCCTCTCTGCCCAGGGCTCTGGAGATCTGGGCTCCACTTGTCCCTGTCCGGAAGTCCTGCCTGGTCTTGGGTCCCGTGGCCTAGGGCAGTGCCTCAATTTGGCCCCCTCCCCTCTGCTGGAGAAGGAGTGTTCTGCTTCCCTCACAGCTTAGGAAGGGGAGCCAGCTTGTCTCCCCTGCCTTCTCTCCCAAGCCCACACCTTCTCCTTCACCACGGAGGCTGTCTTTGTTCCCTCGGAAGGACTCACACAGGTGTGCAAATGAACTGTGTCGTGGCCAGGGCAGGGGCGAGGGTGTTCATTTTTATTTTCCACCCCTTAG
Seq C2 exon
GACCAAAGCCCTTGTCTTAGAGCTCCTGGCAGCTGTGTGTTTGGTACGAGGAGGTCACGAAATCATTCTCGCTGCCTTTGACAATTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(12.4=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(19.7=43.8),PF0636711=Drf_FH3=PU(7.0=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]