MmuINT0065154 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99327515-99327897:-
Coord C1 exon
chr15:99327821-99327897
Coord A exon
chr15:99327609-99327820
Coord C2 exon
chr15:99327515-99327608
Length
212 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
TAACTTCCTTCATCTCTTAGGAC
3' ss Score
9.91
Exon sequences
Seq C1 exon
TATGGCTTCAACTTGGTCATGTCCCACCCCCACGCTGTCAATGAGATTGCACTTAGCCTCAACAACAAGAATCCAAG
Seq A exon
GTGCGTTGATTCCCTCATTATATCTAAAGATCCTGATTCGTCTTTGCAGGTCCTTTAGCCAGGACCTCTTCTGCTGGAGAAGTGACCAGGCTCCACTTTTAATGTTCACAGCCTAGTGAGGGAACAGGCATTCCTGGTCCATCTCCTTCCTAAAGGAAATGAACTGTGGTGGCTTGGATGGGGCTTGGATGTTAACTTCCTTCATCTCTTAG
Seq C2 exon
GACCAAAGCCCTGGTCTTGGAGCTGCTGGCAGCTGTGTGTTTGGTGCGGGGAGGTCATGAAATCATCCTGGCTGCCTTTGACAATTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(12.4=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(20.0=43.8),PF0636711=Drf_FH3=PU(7.0=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCAACTTGGTCATGTCC
R:
TGAAATTGTCAAAGGCAGCCAG
Band lengths:
164-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types