GgaINT0047749 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37141730-37143835:+
Coord C1 exon
chr7:37141730-37141806
Coord A exon
chr7:37141807-37143741
Coord C2 exon
chr7:37143742-37143835
Length
1935 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCGGCTTGCTTTCTTTGCAGGAC
3' ss Score
9.84
Exon sequences
Seq C1 exon
TATGGATTCAATATGGTCATGTCGCACCCGCATGCCGTTAACGAAATTGCACTAAGTCTGAACAACAAGAATCCCAG
Seq A exon
GTAGGCTGTGCTTGCTGTTAGAGAGTTTAAGAAGTAGTTAAGTGAAGAGTAGAGGGATTTTCATGGATTTATGTACAAACCTGTAGCGAAAATCAGCCTTTGCTCTGACTCAGATTCAGTTTGTGTTACAGTGCAGTTAGATGGGCGATTGCCGTTTGGTTCCATTGGTCTCAGAAGCTGCTGAGTCTGCAGCTCTGCCTTTGCTGCTCAACTGCTGCTGCAGTGCAGACTCTGCTGATCAGGAGCAGCTTTGCATGGGATTTTCCTGAAGAAACTAAATTTTCTGCAGTAAATTTTGTTCTAGCCATCTTCAAGTTTGAGTTTCTGTAAGAGCACATTTTATACTTGTTCTGCCTCTGTACAGTGCCTGACGAAATGTCGGGTGTTTCTTCAACCACAGCAGCAGTCCTCTAATGACACTGTGGAGCTGATTGCTGCAAGGTTATGTCCCCTTTCCCCCCTGCACGCATTTGGGAGCTGGCGCCTACATCCAGCCAGACTGGAGCTGCAGGCATCCCACATACCTGGTGATGCCAGAGCTGAGTACTGGTGTTTTCCAGGGAAGGGAAAAGCAGGAATGAGACAAAACTAAAGTGCACCATATAGAGAGAGCTCCCTTGCCTAGACTGCCTGCTTGCCATGCAGTGTTCTGCTTGAAACCTTGGCCTGATGGAAGTGGGTCCTTCCTTCCTCTCTTCTATTTAGGCTTAAGTCAGCAAGCATGAAGGGGAAGGATACAGGAAGTTTGTTGTGATCATTTGTGTCCTGTCCCTGGAAATCAGGTGATGAAGAGACAGCTTAGCGATGAGTGATGCCAGCACAGCAGGTCCTGTCCCATCCCTGCCCCATCGCAGATGCAGCAGGGGAGTGGGTGCCGTACCTGACGCTGAGACCTGGGCATCCTCCTGGCATCTCCATAGCTCACAGCCCTTCAGAGGATGTTGCCAGTGGGCCATAGGGAGAGCTCCTCGAGCCTGTCTGAAAGAGCTTGGGTTTTCTTCTTGTGGCAGGACAAAAAAATGGATGAGTAAGAATTGAAAGTGATCCGTGTAAAATTTCCTGGGGAAGTGAACATTTTATCTGGTTTCCAAAGATAACCTTGACACTTTGAAAGCCAAAAGGTATTTCTTTTTCTGCAACATCTGGTTTAATGCTCAAGCATGAGACTAATTTCATGTGTGTTTGCATGGTTTCGGTATCTGCTCCCAGCTCATCTGGCTTTAAGATCCCATTGGTGCTTTTGCCTCATGTGAACTGTGTAAGAGAGAACTGGGGATTATTTATGTCAGAGCTATACCGAGTGTTGCATGCTTTTCTTTCAGCAATCAGTTGTATCCTCCCCTCCCTGATATGCTGTGTTAGCTGTCAGTCAGCGCCCAGATTTCAGGTACTGGAGGGGGAGGTGTGCTAAGGCACCTTGTGTTCACTTCAGCAAACCACATCTTGCATTTTTTGTGGCTGTGAATAACACAACTTGTCACAGAGGATAACTCAGATGTGCATCAGGGCAGTGCAGATAGAACTAAAAGCTCTGGCCACAGAGGGGCTGAGACATGGGCTGCTCCTAGCAGCGATGCGTTGCCCCGTGTGCCTCCCCCTGTGGGTTTGTGCAGGAGAGCTCCCACAGTGCCAGCTGCCAGGCTGATGCAGACACCATTGGTTTGCTTGGATTTCCTCAAGTACAATTTGTGATGTAAATTTGTGCATCTTTTGGGAAATATTAAAATGGGGGAGAGTTGCACGATCCTGGGAGGCTCAAACTACCCTGGATCAGACGCTGCTCAGCATTCTGTGTCCTGCAGGTTTGCTTGTCTCAAGAGGCTGAACCACTGGATGCAAAGTACTTCTCCCGGTGGCTGCACGGCACTTTGCAAACAGGTAGAAGGTATTCCTCACCCGCTTGTCACTGACTGCTGCGGCTTGCTTTCTTTGCAG
Seq C2 exon
GACAAAGGCCCTTGTCCTAGAGCTCCTGGCTGCTGTTTGTCTCGTCAGAGGAGGGCATGAAATCATTTTGTCTGCGTTTGATAACTTTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(33.3=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(18.7=43.8),PF0636711=Drf_FH3=PU(6.8=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]