RnoINT0061655 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38613049-38614592:+
Coord C1 exon
chr3:38613049-38613125
Coord A exon
chr3:38613126-38614498
Coord C2 exon
chr3:38614499-38614592
Length
1373 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCCCCTTCTTGTTTTGACAGAAC
3' ss Score
9.39
Exon sequences
Seq C1 exon
TATGGTTTCAACATGGTCATGTCTCATCCACACGCCGTCAATGAGATTGCACTAAGTCTGAACAACAAGAATCCCAG
Seq A exon
GTAAGCATCTTTTGTAACATTCAGGGAAGCAGAGTCAGCCATTTTAGAACTGGAATCCTTCCAAGAGTGGCTCTCCCCAGGCAAGACTGGCTGTAAACCCTATGACTGTGTAGAATTTTCACTTTCGCCTGGCTACTCTCCTGTAGGGAACAGAATTGAGCACTTGGGACAGCTCCCAGTCTTCTCTGTTACCTTTCAATCCCTGGGTGACCTGGTTCTCTACAGCTCTACTGAAATGTGTGGTAGGCAGGACTGGGTTGCCAGTCCACCAGGCATGGAGACCGGGAGCGTCTTGACAAAGCTTTAGATACACCAGGTAATATGAAAGCCAAGCAGCCCACCAGGCTATCCTGACACATGCAGCTTAGTTATGAACAGAAAAAGAAGCACACACACACATTTAATGGTACGTGCATGGCTTCCCATTATGTGTACCGTCAAGACCAGAGTCATGTACTGCAGTTCTTTCACTCACATCTGCCTTTTGCTTGATGTACAATAAATATTTCATCTTCTGGTGATGTCTGCATTTCAGTTGTGTACCTCTCCTTCAAATACATAGTTAAGAACTGAATTATCTAAAAAAGTATTGATTCTCGTTTAAAAAAAGAAACCCTGAGGATAAATTGAATCTTTTAATGGAGAAGAGAATATAAATTGTGAAGTCCTGTATACATATTGGATATTTTGGTTCTGTGGTTGCTTTTGTAGTTTACGAAAATCCAAAATAGTCATATGAGTCCTGGTTCCTGCCTTCACCACAGGGAGGTCATTATTCATTTTTCTTAAGACAGTTGACACTGTGGGGTATCAGAACCCTCTTTGTTAAAGAGGTTGGCAGTTTTTATTCCAGAATGAAGACGAAATGCTAAAGCAGTCTCATGATGAAGACCCAATACTGTTTCTTTGTTCACGTTTTATTTGCAGACTTCATCTCTGGCTTCTTCTTCCAAAGTGATTTTAGATGCAACTTTATTTTGTTGAGTGAGAGAAAATATTTTTCTATGAGCACAGCTGTAACCTGGTACTTTTCCGGTCTCCTGCATAAGAAGAAATACTAGAACCCTGTCATGTGGAATTTTCATGGCTCTGTTCCTGCAAGAGAAGTGAAAAGCATTAATTCCAGCTGATTTTTAATTTTGCCCTGTTAGACTCTTAGTTAAAGCTGACCACCACACACACCTTCTCTAGTCACCACAGACTGTGTATTTAGGGAGGTTCCAGAATGTGCTTGGTGTCCCTCAGTTACCGAGGGATTAATGAGTATGCAGGCCAATGCTCTACTCCTCGAGTGTTCATCCTGGAAGGAGCAGACGACTCATCCTGTCTTCTTCAGTGATTTATGTCTTTCTTTCCCCTTCTTGTTTTGACAG
Seq C2 exon
AACAAAAGCTCTTGTCTTGGAGCTGTTGGCAGCTGTTTGTCTTGTCAGAGGCGGGCATGAAATAATTTTATCAGCTTTTGATAACTTCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(33.8=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(18.9=43.8),PF0636711=Drf_FH3=PU(6.8=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]