MmuINT0065128 @ mm9
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52931244-52932767:+
Coord C1 exon
chr2:52931244-52931320
Coord A exon
chr2:52931321-52932673
Coord C2 exon
chr2:52932674-52932767
Length
1353 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCCCCTTCTTGTTTTGACAGAAC
3' ss Score
9.39
Exon sequences
Seq C1 exon
TATGGCTTCAACATGGTCATGTCTCATCCACACGCCGTCAATGAGATTGCACTAAGTCTGAACAACAAAAATCCCAG
Seq A exon
GTAAGCGTCTTTTGTAATGCTCAAGTCTAAATCTTAGCAGGAAAGCAGAGAGCTATTTTAGAACTGAAAAACCTTCCAAGAGTGTCTTCCTCAAGCAAAACTGGCTATAAACCTGCTTAGAATTTTCCCTTTTGCCTGGTTACTTTTATGTCCAGAGCAGAATTGAGTACTCGGGACAGCTCCCAGTCTTCTCTTTTACCTTTCAATCCATGGGTGACCCGGTTCTCCACAGCTCTACTGAAAACTGTGGTGGGCAGGACTGGGTTGCCAGTTCCCCCAGGCACGGGGACCAGGAGAGTCTTGACAAGGCTTTAGCTACGCCAGCTAACGTGAAAGCCAAGCAGCCCACTGGACCCTTATTTATGTTTCTTGTTATCTTGACACATGTAGCTTAGTTATGAACAGAAAAAGAAGCACAAACACAAATTTAACTGTGTGCATGTGTAGCGCCAAGACCAGAATCATATATTGCAATTCTTTTCCTCACCATTTGCCATTTGTATGTTGTATTTTGTCTTCTGGTGATTCGGCATTTCAGTTGTGTAACTCTCCTTCAAATACATTGTTAAGAACTGAATTGTCTAAAAACTATTAATTCTTCTTTTAAAAAAACTGAGGATAAATTGGATTTTTTTTTTAAATTGAGAAGGGAATATAAATTGTGAAGTACTCTATACACATTGCATATTTTGGTTTTGTAGTTGCTTTTGTAGTTTATAAAAATCCAAAATAGTCATGTGTCCTGGTTCCTGCCTTCACCACAGGGAAGCCATTATTCATTTTTCTTTAGACAGTTGACATTGTAGATATCAGAACCGTCTTTGTTAAGGAGGTTGGCAGTTTTTATTCTAGAATGAAGACGAGATACTAAAGTTGTCTTGTGATGAGGAAAGAATACTGTTTGAATTCATCTGTAGCTGTGTCTTCCAAAATGATTTCAGATGCAACTTTATTTTGTTGAGTCAGAGAAAATATTTTTCTATGAGTACAGCTGTAACCTGGTACTTTTCTGGTCTCCTGCATAAGAAGAAATACTAGACACTTGTCATGTGGGATTTTCATGGCTTTTTTTCTGCAGGAGAAAGGCAAAACATTAGTTCCAGTTGGTTTTTAATTTTGCCATGTTATATGATTAACAGTTAAGAGTGACCACCATATACACCTTCCCTGTTCCCTGCAGACGGCATATTTAGGGAGATTTCAGGATGTGCTTGCTATTCCTCAGTTACCGAGAGTTTAGTGAATACGCAGGCCAATGCTCTATTCCTCAAGTGCTCATCCTGGAAGGAGCAGCCAACTCATTATGTCTCCTTCTGTGATTTATGTTTTTCTTTCCCCTTCTTGTTTTGACAG
Seq C2 exon
AACAAAAGCTCTTGTCTTGGAGCTGTTGGCAGCCGTTTGTCTTGTCAGAGGCGGGCATGAAATAATTTTATCAGCTTTTGATAACTTCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-Fmnl2:NM_172409:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(33.8=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(18.9=43.8),PF0636711=Drf_FH3=PU(6.8=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: