RnoINT0061677 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140991971-140992336:-
Coord C1 exon
chr7:140992260-140992336
Coord A exon
chr7:140992065-140992259
Coord C2 exon
chr7:140991971-140992064
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTACTTCTTCATCTCTTAGGAC
3' ss Score
10.46
Exon sequences
Seq C1 exon
TATGGCTTCAACTTGGTCATGTCCCACCCCCACGCTGTCAATGAGATTGCACTTAGCCTCAACAACAAGAATCCAAG
Seq A exon
GTGTGTTGATTCCCTCCTCTAGTGCCCAGGGATCTAAGGATCCTGATTTATCTTTGACATGCCCTCCTGCTAGAGGAGAAGTGTCCACAGCCCAATGAGGGAACAAGCGTTCCTTTTCCATCTCCTGTCTAAAGGACATGAGCTGTGCTGTGGAAGCTTGGGTGGGACTTGGATGTTTACTTCTTCATCTCTTAG
Seq C2 exon
GACCAAAGCCCTGGTCTTGGAGCTGCTGGCAGCTGTGTGTTTGGTGCGGGGAGGTCATGAAATCATCCTTGCTGCCTTTGACAATTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(13.7=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(20.0=43.8),PF0636711=Drf_FH3=PU(7.0=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAACTTGGTCATGTCCCA
R:
TGAAATTGTCAAAGGCAGCAAGG
Band lengths:
162-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]