BtaINT0063342 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100295449-100296028:-
Coord C1 exon
chr11:100295907-100296028
Coord A exon
chr11:100295589-100295906
Coord C2 exon
chr11:100295449-100295588
Length
318 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GTGTGTTTTGCTTTCTTGAGCAG
3' ss Score
-0.17
Exon sequences
Seq C1 exon
GCCTGGCTGGCCGAGGTGGAAGGCCGACTCCCAGCCCGCAGCGACCAGGCCCGTCGGCAGAGTGGGATGTACGAGGCGCAGAACGCCCCCTCCGTCAACAACTGCGCGCAGGATCGGGAGAG
Seq A exon
GTACAGTATCTGTACGGCGCCTGCTTGGGGCTTTTTGTTTGTTTGTTTGTTTTTGGCTTTGTGTTTACTGCCCGATTCTGGAATCAGAGACAAGCACAAGGTCCTTGTCAGGTTCCATGCGTCTGTCATGACTGGCCTGTGGTTTTCCCCACAGTGCAGCTGTCTGATGCCCCGCGGATGGTGCTGGAGCCTGCGGGGTGAGGGGCGGTCCCTGGTTACAACGCTCCGGAATTGCCAGCACTTGGCTCTCGCAGGGGCTGCATTCGAGCGCTTGCTGGGGTCAGTTGCTATAGTTGCTGTGTGTTTTGCTTTCTTGAG
Seq C2 exon
CAGCCCCGATGGCAGTTACACAGAGGAGCAGAGTCAGGAGAGTGAGGTCAAGGTGCTGGCCACAGACTTTGATGACGAGTTTGACGACGAGGAGCCTCTTCCTGCCATAGGGACATGTAAAGCCCTCTACACGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313:ENSBTAT00000027072:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=NA C2=0.736
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(10.2=22.0),PF0218511=HR1=PD(6.1=9.8)
A:
NA
C2:
PF146041=SH3_9=PU(11.8=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCGAGGTGGAAGG
R:
CTTCAAACGTGTAGAGGGCTT
Band lengths:
257-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development