HsaINT0065313 @ hg19

Intron Retention

Gene

ENSG00000187239 | FNBP1

Description

formin binding protein 1 [Source:HGNC Symbol;Acc:17069]

Coordinates

chr9:132662244-132662826:-

Coord C1 exon

chr9:132662705-132662826

Coord A exon

chr9:132662381-132662704

Coord C2 exon

chr9:132662244-132662380

Length

324 bp

Sequences

Splice sites

5' ss Seq

GAGGTACAG

5' ss Score

6.62

3' ss Seq

TGTTTTCCTTTCTTGAGCAGCCC

3' ss Score

7.01

Exon sequences

Seq C1 exon

GCCTGGCTGGCTGAGGTTGAAGGCCGGCTCCCAGCACGCAGCGAGCAGGCGCGCCGGCAGAGCGGACTGTACGACAGCCAGAACCCACCCACAGTCAACAACTGCGCCCAGGACCGTGAGAG

Seq A exon

GTACAGTATCTGCACAGCGCCTGCCTCTGGCAAGGGAGCCTGTTGGCTTTGTATTTATTTCTAAATTTTGGAATCTGGAATGACCATAAGGCACTTGTTCAATGCCAAAATGTCTGTTGCGATTGACCTGTCACTTTTTCCATGATGCAGATTTATAATTCCACATGGGATGGGTGATCTGAGCGTGCGATGATTTACCATGGCCTCAGTTACAGCACTCGCTGAGGGGCGGGGTTGCAAGTGCTCTCCAGTCGCAGGGACTCAATCTGAGTCCTCCCTGGGGTCAGTCGCTTTAGTTGCTTTGTGTTTTCCTTTCTTGAGCAG

Seq C2 exon

CCCAGATGGCAGTTACACAGAGGAGCAGAGTCAGGAGAGTGAGATGAAGGTGCTGGCCACGGATTTTGACGACGAGTTTGATGATGAGGAGCCCCTCCCTGCCATAGGGACGTGCAAAGCTCTCTACACATTTGAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000187239-FNBP1:NM_015033:14

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.809 A=NA C2=0.760

Domain overlap (PFAM):

C1:

PF039618=DUF342=PD(22.4=68.3),PF136541=AAA_32=FE(26.7=100),PF143891=Lzipper-MIP1=PD(9.6=19.5),PF0396210=Mnd1=PD(24.0=56.1),PF154561=Uds1=PD(11.1=24.4),PF0043516=Spectrin=PD(11.1=22.0),PF0218511=HR1=PD(5.5=9.8)

A:

NA

C2:

PF136541=AAA_32=PD(16.0=51.1),PF146041=SH3_9=PU(11.8=12.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000413625