MmuINT0065305 @ mm9
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:30891638-30892183:-
Coord C1 exon
chr2:30892062-30892183
Coord A exon
chr2:30891778-30892061
Coord C2 exon
chr2:30891638-30891777
Length
284 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CTGTGTCTTCCTCTCTTGAGCAG
3' ss Score
1.76
Exon sequences
Seq C1 exon
GCCTGGCTGGCTGAGGTAGAAGGCAGACTCCCAGCTCGGAGTGAGCAGGCACGCCGGCAGAGTGGACTGTATGATGGCCAGACACACCAGACGGTCACTAACTGTGCCCAGGACCGGGAGAG
Seq A exon
GTACAGTACCTGCGAGGCCCTGCCTCTGGCAGAGAGACGGTCTAGCTTTGTACTTACTTTTCAATTCTGGAATAATTTCTCACGGACAGAAGGCAAGAGTGTCTATTGTGTGGCCTCTGATTCATCCAACGGGAGAATATCTCAGTTTACTTTACATCCAGTCCGGGCTGGTGGTCTGAGGTAGCAGCAGCTCCCACAGCCTGGTTGAGCATTGCTCCACGGGGTGGGGCAGAGCAAGTCTCCAGGTTGGTCGCTATAGTTGTCCTGTGTCTTCCTCTCTTGAG
Seq C2 exon
CAGCCCAGATGGTAGTTACACAGAGGAGCAAAGCCAGGAGAGCGAGCACAAGGTCCTGGCCCCGGATTTCGACGATGAATTTGATGATGAGGAGCCGCTTCCAGCCATAGGGACCTGCAAGGCCCTCTACACATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-Fnbp1:NM_001177649:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.783
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.8=22.0),PF154561=Uds1=PD(12.5=24.4),PF0218511=HR1=PD(0.1=0.0)
A:
NA
C2:
PF0001823=SH3_1=PU(14.6=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTGGCTGAGGTAGAAG
R:
TTCAAATGTGTAGAGGGCCTTGC
Band lengths:
260-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: