DreINT0069244 @ danRer10
Intron Retention
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6270197-6270928:+
Coord C1 exon
chr21:6270197-6270324
Coord A exon
chr21:6270325-6270767
Coord C2 exon
chr21:6270768-6270928
Length
443 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
GCGTGTGTGTGATGGAGCAGTCC
3' ss Score
0.71
Exon sequences
Seq C1 exon
GGCTGGTTAGCAGAGGTCGAAGGAAGGATGCCGGTAAAGAGTGACACTTCACGGAGGACGAGCACCGTATACGAGACCCAAAACAGCACACCACCCACCAACAACAACTGCGCACAGGATAGAGAGAG
Seq A exon
GTACACACTCACACACACATAAACACACGTCTGTGCTTCTGAGGGACCTTTTGACTCCGCCCGCAATTTCATTTGATTTAAAATGAATTAACTTTTGGTTAAGTTCTGACTACGCACCTATTTTGTTTATTACTGGTTTAATCAATCATTTTCTGCATTTTATCGCAATATATTTGAATTTATCTCTGTTGAAACATTAAAGTTAATGTTTTGGTCACACTTTAGAATAAGGCTTCATTTATTAATGTTATTTAATGTATTTACTGACATGAAATAATAATGAAAAATACATGTGCAGCATTTAAGAATAATCATTAAACAATGAACAACTTTATTTCCTTTAACTAAGGTTAATGCTCACTCTCAGTTTCCAGTCACTTGTGTTTTCATGACAGCTGCTATAGTTATTGTGTACGTGTGTGTGCGTGTGTGTGATGGAGCAG
Seq C2 exon
TCCGGATGGCAGTTACACAGAGGAACCGAGTTCTGAGGTCCAGACATCTAATGAATCTAAAGTCCAGCCAGAAACAGCCGAGTCTGGAGATGAGTTTGATGATGCTGAGGAAGACATGCTTCCGACCATCGGCACCTGCAAAGCCCTTTACCCATTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028:ENSDART00000163577:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=0.925
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(10.2=20.9),PF0218511=HR1=PD(10.1=16.3)
A:
NA
C2:
PF146041=SH3_9=PU(11.8=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTAGCAGAGGTCGAAGGA
R:
CTTCGAATGGGTAAAGGGCTT
Band lengths:
286-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]