BtaINT0064425 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66980193-66980511:+
Coord C1 exon
chr3:66980193-66980344
Coord A exon
chr3:66980345-66980431
Coord C2 exon
chr3:66980432-66980511
Length
87 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ATTGATTTCTGTCTTTTCAGTGG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGTGTCCCTGGCCCCCATGGGCCTCCTGGGCCTCCTGGACCAGGAACTCCAATGGGACCATATAACCCTGCACCTTATAATCCAGGACCGCCTGGCCCTGCTCCTCA
Seq A exon
GTAAGTTTTGAGTTTTGCTCTTGGCTTTTCTTCAAAGATTACAGATTTTGGTAAGTTGTATTTTTAAATTGATTTCTGTCTTTTCAG
Seq C2 exon
TGGCCCTCCAGCCCCTTATGCTCCCCAAGGGTGGGGAAATGCATACCCACATTGGCAGCAACAAGCCCCTCCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926:ENSBTAT00000011751:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGTAAATCCTTTAGGGCC
R:
CTTGGGGAGCATAAGGGGCT
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]