GgaINT0039164 @ galGal3
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19602834-19603151:+
Coord C1 exon
chr8:19602834-19602988
Coord A exon
chr8:19602989-19603071
Coord C2 exon
chr8:19603072-19603151
Length
83 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TATTGTTTGGTCTTTTCTAGTGG
3' ss Score
8.29
Exon sequences
Seq C1 exon
GGTCCGGTAAATCCATTGGGTCCACCTGTTCCCCATGGACCCCATGGTGTTGTTCCTGGCCCACATGGACCTCCTGGGCCACCAGGCCCTGGTGCTCCCATGGGACCATATAACCCAGCTCCTTATAATCCAGGGCCTCCTGGCCCAGCACCTCA
Seq A exon
GTAAGTACTGCTTCAGTGAGCTTTCTTCTTTGTGTGACCCTGACACTGGCTTTCAATTTATTTTATTGTTTGGTCTTTTCTAG
Seq C2 exon
TGGTCCTCCAGCTCCGTATGCTCCACAAGGGTGGGGAAATGCTTATCCACACTGGCAGCCACCAAATCCACCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTAAATCCATTGGGTCCA
R:
CTTGTGGAGCATACGGAGCTG
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]