BtaINT0065965 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000730 | GCG
Description
Bos taurus glucagon (GCG), mRNA. [Source:RefSeq mRNA;Acc:NM_173916]
Coordinates
chr2:34398011-34401398:+
Coord C1 exon
chr2:34398011-34398090
Coord A exon
chr2:34398091-34401297
Coord C2 exon
chr2:34401298-34401398
Length
3207 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGACTCTGTGTTTCAACAGGCA
3' ss Score
10.88
Exon sequences
Seq C1 exon
ACAGAGCTCAGGACACTGCACACCCAAACGAGGGCTCACTCTCTCTTCACCTGCTCTGTTCCACCTCCTGGTGTCAGAAG
Seq A exon
GTAAGGTTAATATTGAGTGATTGTAAGACTGTACATTCTGTTTAGGGTACAGTTAAGTGTTCATAAGGGGGCAAAGTATTATGAATTAAAGTGCTGTTTTTTCAACTTATACTTTGTTATTATACTACGCGAGGCAGAATTGAAATGAAAAAGTGATGTAAAATGCATTTAAATAAACTTTAACATAATAAAGCCTCAAAGCGAGTCAAAGAAATAATTCAATGAAAAGATATAAGATAGAAAGAAAAACAAAGATTCAAATCAAGGCACTTATTACAAAATTTAACTAATGAAAATTGCATTTTAAAACCAGTGGTGACATTTTGAAAAACAAATATTTTTCTTCGGATTCGATAAATGTGTATACCATTTTGAACAGAAGGCGCCTTTTAAACAGCAGAAATGTGCCCATTTAGAGAGGTTATAATAGTAATTGATCCTTACCAATGAAAACGTATGGTTTTCCAGAAAAGCAAAATCAACATCATCATTCAAATATTCAAATTTCTGATAAGGCTATCAAAAAATCAAAGTCCATGAAATCAGCTCTTTGTAGATAAGACATAGCGTATTCAGGGCAGAGAAGTAATGTCATCAGTTATTGGGAATTCTGTGGATGGAGCTGAGTAAAAGCACAGATTAATAATTACTATGTTTTGGGGACCAATAGTAATAAATAAACTATCTAAAATGTCTACATTCCAAAATGAAATTTTAGTAAATACCTTAAGAAAAAAAATCAGATGGTCTAAAGTACCTATTTAAGCTCTTAAGGACAAGGAACAATTTTACAAAGATCTTCAGGGGAGAAAATGATTTCATCGTGTTTTTTTGTGTTTGTTGGTTTTCACACCTCCCCATCAAATTCAGGATCTTAGTTTCCCGACCAGGGTCAAACCTGTGGCCCCTGTATTGGGAGCACAGTGTCTTAACCACTGGACCACCGGGGAAGTTCCATGTGGTATGTTTTCTTTCACACATACTAATTAATACCTGTGAGAAGAAATTACCTAGCCAGTTTTAAAAGAATTTATTTGGCCTATGGCCCCAGTATACTTAGGGATATACTATATAATATATGTCACCTTGCCTAGATCAAAGATTAATCTTTGCAAAAGACTTCCTATTTAGGAGGTATGATTGGTACCACATCTCCTTTGAAATTTGAGTGGAAATGTATAGGTTTTATTAAAGTGCAGACTCTCTCTGTAGGCTAAAGCAGGGGTGGGAGAGTAATTGGAAAGTCTCTCCTCACTGAATAAGATTTTGATACCAAAATGATGCAAATGTTTGCTTTCTCAAGTAGCAGTATTCAAAAATCCTTATTCTTAAATATTTCACAATTCTGTTGACTTTTACACAATGAATAAATAAAGTTTCAAAAATCAGTTATTTATTTAAATAGAAATATTCTACTGCCTGGGGAGGACTTCAAACACTGACTTCTCTATGGTTGTTTCTTATACCAGCTCTCCCAGAAACTACATGTCCCATATCTGCCATATCCATATCCTAATAGAAGACATTGTAAAACCTTTAGGGACATTACATGAAAGCAATTATAGTTTTCAGTTGACTTTCCAACAATGATGTAATCCTAAAGAGGAATGTTTGCTTTAATTTTTTATGTTTCTGAATTTTATGAATGTATAATTAAAAATTGCAGTCAAAGACCCTGCCTATATATTTGGCAAGGTTTCCCAAGTTTTCCAACTGTATAAACTGAAGCACAGAAACACACCAAATTAGTAATTGAATATTGGTGAATAAAGGGTGAACATGTAACGCCTATTGTGTTGCTTTATCTAATTGATCACTTAGTCTAAAAGGCAATATTTTAAAGGGAAAAAAAATACCACTGCAGGTATTTCCAGTCCTCATGTTTTAGTGCCAAAGAAAGATAGGAAGTATGGCTAAGATGTTAAGACAAGGTTGATAGTTTAAAAGGATAATATTTGTAAAATACTCATTTCAAACCAAATGCCATTTGCTAAAAATACTCAGTCAAATTTTTAACAAATAAGCATAATCAAACTTGGATTGAAATCCCCACTTCTCAAAGTAAATATGGTCGGATTTGAAAGAAGCAGAAAAAAGTTTACAAGAAACACTGGATTTGAGATTTTCATTCAGAAAATAGAGGTGCTTGTCCTGTGGGGTCATTCTGCCCCACACTCATGCTGGTTCCACCCCACCCCATCCACAGTACATTATCATGTCCTTGGCATCCTATGGCCTCACGGGGCATCTGCTTATGATGCAAGGTATCTTGCAACATGGTCTAGGGTGTCACTAGCAGTGAATGACACATCCTGGACTCAGTCCAATTATAAAACAACCTGGGGACTTTCAAGACTTCAGAAGCAAGCATTAATTTTCTTTATGACAGTGATCTCTTAGTTTCTTAGTTGTGATTGTTCAAGTTGCCAGAAGCATTAGTTCTTGTTGCAAATTGCTTGTCTTTAAAATGATTTTTTTCCTTTAATTTAGAATAGGTCAAAGCACCCTAAAATACCTCAAATCTGTTGGCCGCTTTATAATTACAAAGTCTAGACCAAGTTACACTATTTAAAATATAAATGAATAATACATCTGAACCGACAGCTGGTATGCCAAGTTGTAGCCTGAGGCTGCTTTAAGATGGTTGAAATGCAGTATAATGTAAACGCTTGGAAGTGAAGGACTATTAATTGAAAGCCAGACTGATAGTGGAGAGGGTGGGATCATGGATAAGGTGCCATTCAAGCTAACCATATGTAGCATATCATCTACAGTGGGTATTTGCAATGTTTATCATGGACAATTTTAATTTCAAGTCTGGAAACGAGCCTTCCAATTATTAACAGAAGTGTCCTACACTAATGAAGAAATTTCATAGTGCTGCACATCTTTTGTATTCTTTTTAGCCACCAAAAAAAAAAACTGCAAGAAAAATATATTATAATATTTTAAATTAAACTAGAAATATAATCAGAATAAAATTGATGACTAGTGTTTTCTTTCTACTCTCAATATTTACTTAGTCAAAACTGAACTGGGCACTCTTTCTGCCCCCTTCTGATGCCTATGTCAGAAGCTTTCTCCATCTCCTTTATACTTTAATAAAACTTTATTACACACACACAAAAAAAAAACTGAACTAATTCACCTGACACTTTTAATATGGTTGAGTGTCTTTATGTCTCCCCTGACTCTGTGTTTCAACAG
Seq C2 exon
GCAGCAAAAATGAAAAGCCTTTACTTTGTGGCTGGATTGTTTGTAATGCTGGTACAAGGCAGCTGGCAACGTTCCCTTCAGAACACAGAGGAGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000730:ENSBTAT00000064745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.226
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]