HsaINT0068253 @ hg19
Intron Retention
Gene
ENSG00000115263 | GCG
Description
glucagon [Source:HGNC Symbol;Acc:4191]
Coordinates
chr2:163005597-163008914:-
Coord C1 exon
chr2:163008668-163008914
Coord A exon
chr2:163005698-163008667
Coord C2 exon
chr2:163005597-163005697
Length
2970 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCCATTCTGTGTTCTGACAGACA
3' ss Score
9.16
Exon sequences
Seq C1 exon
GCATAGAATGCAGATGAGCAAAGTGAGTGGGAGAGGGAAGTCATTTGTAACAAAAACTCATTATTTACAGATGAGAAATTTATATTGTCAGCGTAATATCTGTGAGGCTAAACAGAGCTGGAGAGTATATAAAAGCAGTGCGCCTTGGTGCAGAAGTACAGAGCTTAGGACACAGAGCACATCAAAAGTTCCCAAAGAGGGCTTGCTCTCTCTTCACCTGCTCTGTTCTACAGCACACTACCAGAAG
Seq A exon
GTAAGATGATTATAAAATTGTAAATCCTGTTTGGCGGACAGTGAAGTATTTTTAAGGGATCAAAATATTATAAATTAAAATGTTGTTCTTTCATCTTAGACTTTATTACTAATAGTACACAGAGAGGAACTGAGATGGAAAAGGTTATATCAAATGCATTTACGTGTACTTTAATATAGCGAAGCCGCAAAGCGAGTTGGAAAAATAATTATATGCAAAAATATAAAACAGAAAAAAAACAAAGATTCAAATCAATGCACTTGTTATAATACTTAACTGTTATGAGAGTTGTATTTTAAAATAATTGGTAACATTTTGAAGAATAAATATTTTTCTTGGACTTGATAGATCTGTATACTACTTTGAACAGAAGGCGTCTTTTAAAGTAAGCAGAAATGTGTCCATTAGGGAGCCTATAACAGAAATTGCTTTTTACCAATTAAAATCTCTGGTTTTCCAAAAGAGCAAATTAAATAACATCTTTCAAATATTCAAATTTCAGACATCTATCAAAAAATCAAAGTCCATTAAAGCAACTCTTTGTAAATAAAACATAGCGTACTTGGTGCAGAGAACAAGTGTCATCTATTTGGGGGGTTTTCTTTGGATGCATCTGAGTGAAGCCATACATTAATAACTATTTACTATGTATTGAGGATAAATAGTAATAAAATCTAAAATAGCTACCCTCTGCAATAAAATTTTAATTTGTCTTTTTAGATTAGGCTCCTAGAGACAAAAAACAAATTTACAAAGATCTTTGATGGAGTAAATGATTAAGTGGTGTATTTTTCCATACATACTGAAGACCTATTACATAAAATGAGCTAACCAGTTTGAAAAAGGATTTATATGGACTACAATGCCAACACATTTGGGGATAGAACATAATGTCTTCTTTTTTAGGTCTAAGGTTAATCTTTCTGTAAGACTTCCTACTTATTATTGTTACCATACTTTCCTTTAAATTTTAGTGGAAATTTGTAGTTCTTACAAAACTGCAGGCTCTCTTTAGACTACCTAAAGAGGGGGGAAATTAACTGGAAATTATTTTCTTATTGAATAAGATTTTAATACTAAAATAACATAAATCTCTACTTTCTCAGCAATTGTATTCAAACAATTAACTCTATTCTTTTTTTTTTCACAATTCGATAGACTTTCACAAACAAATAAGTGAGATTTTTAAAGCCAGTTCTTTCTTCAGAAGAAGTCATTTATTGTTGGTAATATTATTAGATACGGAACGCTCACTTCTTTATGTGGTTTATGGTTGTTCTTTCTTCCATCAGCTCCTGAAGTGGCAGGATACCTCCTGCTCTAAATCCTCCTCAATGGAACATAATAGGAGATATTGCAAAACGCTTAGGACTTTGGGTGGAATGAATTTTTTTTTCAGTCTTGTGAAAGACTAAAAGCTTTTACAAGAAACTTTTCAACAGTGGTATAATTTTTAAAAGAAGTGCTTACTTTAATATTTAAATATTCCTGCAAGCACGGATATAACAATTGAGAGTTATAATCAGTAGATACTACCTAAATATATGGCAAGGTTTCCAAAGTCTGCCAACCGGTTAAACTGAAGCATAGCAAAATGTCAAATTGGTAATTTGATGTTGATGAATGAAGAAAGGTGAATATATCATTCCTATTATGTTCCTTTGTCTAATCATCCATTCAATGTACAAAAAACTTAATATTTCAAAGAAAAAAGTTACTGCTGCAGGTATTACAGTGTCTATGTTTTAGTGCCAGAGATAGTAAATACAGCTAATATATTAAGGAAAAGATTGATAGTTTAAAAATGATAATATTTGTGAAATCCTTATTCCAAACCAAATGTCATTTGCTAAAAATATTCATTCAAATTATTTGTGGATAAGCATAGTCAAACTTGGATTGAAATGCCCGCTTCTCAAAGGAAACACCATTGGGTTTCAAAGTAGCCGAGATCCATGACAAAGACGGACTTGACGTTCCCATTCAGAAAATAGAAGCGCTTGCTCTGTGGGGACATTCTGTCCCACATTCATGTTGGTCCCAGTCCCCGTCGACACTGCATCATCACATCCTTAACATACTATGGCTTCGCAGGGCATCTGCTTGTGACACAGGGACAAGCAATCAGGTGTATCCTATAACCAAGTCTATGGTGTCACCAGCAGTGAATGACATGTCCTCATCTAAGTCCAATTAGAAAACAACCTGGGGACTTTTATGACTTTAGAAGCAAGCTCTAATTTTTTTTTACATAGTAATCTCTTAGTTTTTTAGTTGTGATTGTTCACGTTGCCAGAAGCATTAGTTCTTGTTGCAAATTGCTTGTCTTTAAAATGATTTTTTCCCTTTAATTTAGAACAGGTCAAAGCACCCTAAAATACCTCAAATCTGTTGGCCGCTTTATAATTACAAAGTCTAGACCAAGTTACACTATTTAAAATATAAATGAATAATACATCTGAACCGACAGCTGGTATGCCAAGTTGTAGCCTGAGGCTGCTTTAAGATGGTTGAAATGCAGTATAATGTAAATGCTTGGAAGTGAAGGACTATTAATTGAAAGCCAGACTGATAGTGAGGGGGGTGGCATGATGGATAAGGTGCCATTCAGGCTAACCATATGTAGCATATCATCTACAGTGGGTATTTTAAATGTTGATTGTGGACATTTTAATTTCCAGTCTGGAAATGAGCCTTCTAATTATTAAACAGAAGTGTCCCTACATTAATGAAAAAGCTTAATGGTGGAACACATCTTTTGTGTCCTTTTTTGCCTCCAAAAAATCTGGGGAAATAATATAACCCACTATTTAAAATTAAGCTGAAAATATAATCAGAATAAAAGTGATAACACTAGCTTTTTCCTTCTACTTATGATATTTATCTAGTCAAATCTAATTAATTTAGCCTGACATGTTTAAAAATCCTTGCCTGCCCCCCTCACCCTACCCCCATTCTGTGTTCTGACAG
Seq C2 exon
ACAGCAGAAATGAAAAGCATTTACTTTGTGGCTGGATTATTTGTAATGCTGGTACAAGGCAGCTGGCAACGTTCCCTTCAAGACACAGAGGAGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115263-GCG:NM_002054:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.129
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)