BtaINT0067415 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3613638-3614786:+
Coord C1 exon
chr7:3613638-3613690
Coord A exon
chr7:3613691-3614701
Coord C2 exon
chr7:3614702-3614786
Length
1011 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
GTGATACTCCCCTCTCCAAGGGT
3' ss Score
5.46
Exon sequences
Seq C1 exon
CCCCGTCCTAGCCGAGCGACCCTAGGGCCGGAGCATGGACTCAACAGAGCCGG
Seq A exon
GTAGGCGGTCCGGGACTCGTGATCCTCGAGGGGCCTCTCCCGACCGTATCCTACTTCCTAAATCAGTGAGAGTCCCCTCCTGACCCTCTCTGTCCGGAAAGCTGGGAGAGGAGTTCCTGAATGGGGAGGACGCGGGAATTCTCCACTGTGGGGACTCCCAAGCTGAGAGGGGGTCCGGGACACCAGCCCCTGACCCCCTCCCCCGTAGGAGTTCACCCCGGATGTCTGGGGGAGGGGGCCCAGGAAGGGGAAGTGGCCGCTTCTGCTTCTGATATTTGTGATGGGGGCAGGGTGTCACGACTGCTGATGGAGAGGGCAACGCGGCAGGATCCCCACCCAGCTACTCCATTGCCCAGGGAGGGGAACATGCTGGTCTGCGCCCCCTAGAAGGGGTGCCTGCAGCAGAAACGTGGCGAGGTCCGACTTTGTTTCCGCCAGTCTTTGTGTCTCTGATTTGCATATTGAGTGTCATTTGGTCTTTATGCCTCTCCGGGTTTCAATCTGCCCGTGTGTGTTTCTGCCGCGGGCCCTGTGCTGGTCTGTCCCACGTGTATTTCCATCTGTCTGGCCTGAGGTCCATGTGGCTCCATTGTCAAGCTGTCTCTGTCCCTGGAGATAGTGTGGCTGTATCTAGGACATCTGTTTTGTCACTTTGCTTCTAGGCCCATGCATGTGTGGGTGTCTCTGCTTCTCCAAGCCGCGGTCTCTGTGTTGGGTTGTGCCTGAGTCCGTCTGCCTGTCCTGAGTCGGGCCCCACCCAAGCCCACACTCCCGCCATCCCAGCTCAAACACCCACACCATCCTGCACTCCCCATGGGACCAGAACTCTATCTCTCTTTCTTTCGTTTCTCTTTCCCTCCACCCTCCCACCCCACCTCCCCTCCCCCATCCCCCCACCCCCGATCCCACCCCCACCCCTGCTCGCCATCCTCACCCTCCAAACGACCTGCCAAGGTGCAGTGGGTGGAGAGAGGCTTCTGTTGCCCCATGTGTGATACTCCCCTCTCCAAG
Seq C2 exon
GGTTACCCCCGCCTCCTGAGAGCAGGAAGAGGTACAGTGACATCTTCCGAAGCCTGGACAACCTCGAGATCTCACTGGGGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144:ENSBTAT00000020147:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]