GgaINT0003164 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:28131570-28137321:+
Coord C1 exon
chrUn_random:28131570-28131731
Coord A exon
chrUn_random:28131732-28137227
Coord C2 exon
chrUn_random:28137228-28137321
Length
5496 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TATTTCTTCCCCATTCCCAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
CAAGCAGCTCTCACGGGATGGGGTCACTTCCCAACGTCTGATCCAACCCCCAAATCCCCTTTTGCTCAATCCAGCTGTGATTCAGAGTCGGATTGCTTGGGATTCTGCTGCTTTCAGACCAAAAAACTGAGGATTCGGCCATGGGAGACCCGGAGCAAAGTG
Seq A exon
GTATGTGATGGCATCAGAACCTTTTGTCGTCTTTATGAGTATTTTGTGGGGCAGGAGATGACAGGAGAGTCGCCTTGCAGATCTGGGTGCCAATGCAACCCATTGGGGTTTCCATCAAGATCCAGGTCGCCCTGATCTCATTGAATTCTCATTGGATTCCATTGAATTTTTCTTGAATTTCACTGAACTCTCATTGAATTCTCATTGAATTTCATTGAATTCTCACTGAATTTTCTCTGACGTGGCATTATTTGATGCACTGGGACTGGACATTCTCTTAGGTAAGAGGAAAGGGAGCAGACCACATTTTTGGGGAGGCAGGAGGCGTTCTCTCAGTGTTGGCACTTTGCACACTTCCGGTCGGGTCCATCCGACCAAAAACTGTGATAAAGCCCAAATTAATATCCATTAGGCTATCACCTATAGAACAGAATCAGCATGACTGAATAACACTCTTTTTTTTTCATGGCGTCTGCACACAAAGCTCCTGTTGGGCACCCTCCTCTTGGGTCCCTCTCTGCTTTTTTTGAGGCACTTTTCCAGCCTGGAGGAATGACATCTGCAATTAATTTGCAGGCATTAGGCTGCTTGCTGCCCTTTCTGAGGCCAATTGCACGCTAATTAATGGCATTCTGCCTTCATTATTGGTGTACGATCATTATCTTGCCAAGCACTCCACCACGATGCAGGCTGATTGCTTATTAAATTCATTATGACCCTGTGACTCTAAAGCCACCAAAGAGTGGTGTCTGGGACCTCTAGAAGCAACCCCGTACATGGATCAATTAGCAATCACATCTGTTGGCTTATTAGCCACCCCGTTTGTGGATTAATTGATTATCTCTGATTTAAGCTGTGTTTTTAGGTTTCTTAGTGAAACTTCTAAAATCGGACCAAGAATCCCATCCTTTGCCTTCGGAACATCCCACTGGGCCATACCCACAGAGTTCCTCCCACCAACAGAACCTCACATATCAGGGTTGGTTTTCAGCCATTCTACAAAGCAACAAAGTTCTGTGTGTGAATTATTTTCCTCATCCCTATATTTTTTTGGCCAACGAGGGTCTTTGATTCATCCCTCCGTGACCAGTAGAGGAGCATTTTCAATTCACACACTTTTATTTTAATGAGGTGAAATGGTGTCGTAAGTGGAAATTCTCATCTCACCCCCTCGACACGTCTCATTACCCCCTCATTAATGCACAATCTATTTATGACTTCTGACTTTGCTATTATTTCCTGTCCACTGGGAGCTGTTAATTAGCATCTCTGACCTCCTCAGTGATGAACTGATTTATAAATTCATTTTTTCACTATTTTTCTTTTTTTTTCCCCCACTAAAGTGGGCAGAGAATACAAGAAATCAGAGCGACGGATGGGAAGCGGTGTTGGTTTTACAGCAGCACTGGTGAGGAACTCGGATGATTCTGAGCTGGGCAGGGAGATGCTGAGCAAGGCACAATTAGGCACAGTCATAATGACACAGCCTCACTACAGGGGGAGGATCTCACATAGGAGCAGCGCTGACAATTCAGGTTTCCAGAGGCTTTTCTCTTGGCCTCTTTTTTTTTTCTTTTTTACCAAAAAGTTGGCAGAAAGTGGATTTTCTACATCTGCTGCTGAGATGCGTTGAGCCCTGATATGCAGAACCAGCTTTGCCCTGGCGGAAAAGCTTCAGATATTGCATTGCAAAGTGCAAAACTGAGTGCAGAGAAGAGGAAGGCGCTGCCAGGAAATCTCGCGGTAGAGCTGTGATACCGAAATCCACCGGTGGTGCTGAACTGAGGGTTTGGGGCAGTTATCTCATGGCCCGGCTGAAAGGGAAGTGATGCTTCTGTTGAACTGCAGAACAAGGGCTGCTAAAAATACTGTGATGTTTTTATAGGACGTTGCAGCTTCCTTCGGGCCCCTTCGTGTTGGTACGGGTGGGATTGCTGCCCTTGGTTCAGAATTGCTGAGTGATAGAGATGAGGAGGAGAAATTAAACCAAAATCACCCTCAGAGATGCAGAATTGAGAATATAGGGTGGATTGGGTTGGAAAGGACCAACCGAAAGGTGATACCAAAAGGCATCACCTCGTTCCAACACCCCCTGCCATGCAAATTGACTTAATTTGCTTTGCTCGCATCTGCAACCCAACCTCAAGGCTGGGAGAGCTCAAAGCCAACCTGAAGGATCCCGTGATTCTATGGGCATGGTGGGGATGGGTTGGCAGTTGGACTTGGTGGTCTGAGTGGCCTTTCCAACCTTTATGACTCTGTGATTCTAAAATCCTGCCCCCAGATGTGTTTAATGGTTGGACTTGAGGTCATTTCCAACCTTAATGGTTCCATGATTTAATAGTTCTGTGGGTGGGGATGGGTTGTTGGTTGGACTGATGATCTTGCAGGTTTCTTCCAACCTCAATGATTCTACAGTTCTATTTAAGGTCATGATTGAGTGGGAACGGTGGTGATGGGTCAGTGGCTGGACTTGATCTTGGAGGTCATTTCCAACACCAATGATTCTATTATTCCGAAATCCCGCCCCAAAAATGTGCTGGTGGTTGGATTTGATGTTCTTGGAGGTCTTTTCCAACTGTAATGATTCCATAATTCATGGAATGGCGATGGGTTAACGGATAGACCTGATGCCCTTGGAGGACTATGAAAAAAGTCAAGATTCTAAGAAAAAAATTGTTTAAATGAGAACGGCACAATGATTAATACTCTCAATTTTATGAATTTCTCAGACCACCTTCTTGCTTTAAGAGCAGTCTTAAAGGTGCTTGGGCAGACCCCACTTCCTTATTGAGGCCATCACATTCGCCTTCTCTACCTTGCTGCTTCCATGGGACACCATGTAGTGTTATTTTACTTCGGATTAAAGGAAGGGTTGATGAGAAGGCTGAGGCTGTTGATTCTCTGCTGTACAAGAGCTGCTTTCGAAATGTTTCACGCTCCCCATTGCCAGCACTGCTGGGTTGAGTCACTCCTTCCTGTTGTATAATCCCCCACTGGTGGTAAACAAGAGAAATTAAAGACATCTGTTCAAGCGAACAGTGAAAGACATGAGGCTTCCAATTAAACTATTAAGTTCAGATTTATGTCTTGGATTATGAACAGTTGGTATTTATATTCAAAAGAAGAACAAAGAGAATTTTGGTAGACTCCCCCCCCCTGCCCCGAGCAGGAGGTGGGGACGTTGATTTACCCCTGTGAGGTGTTGGGTGCAGTTTGTGGCTCTGTTGGTGCTTTTATGGCCAAAAATGAGCATCTTCGCCCCATTTTGCACTCCCATTTCTTTTGGGATGAAAGCACGTAAAGAAATAAAGCTGAAATGTGGATGATTTGCTCAGTAAGGCAGAGGCAAATCAGTCAGGAGTTGGTTGGGAGCACTCCCATGTGCAAATCCGAGGATGTTAAATTTAATAAGGAAGGAATTCTCACTGATGTGCTGCTAGAAAATATCTGATGTGTTAAGAGGCACTTTTTTTGGGGCAGGATAGTCTCATTTGGCATTTTTGTTCTACATGATCATAACTGCCCTCAGAAGACAGAGATGTATTGAGGCTGTAATATAAGCTGCAATTAATTAATGTTGATTGAGAAGCTTTTTATAGGCACTGATGCTCATCTTGGGGCAAGAAAGCAAGAAAACAGATGCACTGTTTGCCAATACCACAACAAAAAAGTGCTTCCAGAGGACCCAAATCACTGGGAACGATACCAGCGGAATTTCAGGGCCTTGTTTGAGGAAAAACTGCTCTTCTTTGCACAACCAGATTCAATGTGTGGAGTCCACAAAAGAAAGAATGAATGAATTCAGGAACGAAATGTCTGAAAAAGAGGGCGGTGGGACACAGGAGAATATTCCCACAACCCCCTGTGTGTTCCTACCCATGAGAGTGGCAAACCTCAGATGTGCAGCTGTTGGATCCTCAATGCCAAAAGGCGCTGACAGTCCCTCACTGCTGACACAGAAAAAAACACAATTTTTTGCTTTTTCTGCACCATCAGAATGACATTTGTGAGAGGAACGCAACGACAAGTGAAGCAACTTTAGGCTGAGGTCAACCACATCCTGCTTCCTGGGATGTTGAAAGGACAAAAAAGAGTGAAGCTTTCTTTTGTTTGTTTTTCACCACCACTGCCCGTTTCTATATTTTAAAGTGTTTTTTGTTCTGTGGTTTTTTTTACCCTTTTTTACAGCAGCTTTCAGCCCATGCAGAGTTTTACGTCTGCCCTCAGTGACCAATTAGCAGCGTTAATTACCACATGTGGTCACCTGCTCCATGCACGGGCTCAAGCATAGTATGCTGAGAGCTTACAAAGGTCTATGGGAGGAACCCGCTGCCCCTCGTGGAGGGATGAGCCCATTCTCCATTTCATGTGCCCCCCAGAACTGCCCCCCTTGTGGCAGAAATGCAGATCCTCACCACAAATCAGACTGAGGAACCTCCACGCACAGTGATGCACATGTGATGCATGAGGAAGAGGCAACTTCTGCACTGAAGTTGACTGTTGGGCTGCCAACACTTCTGCTGTTCAGTCCTGTGCATTCAGTTCTGTTTTGCTTTCTGTGTGTGCAGAGCAGGTTTTTGTACCCCATGAGCTCCTCCATCAGGTCTCCCGGTGCATTGTCAGCACTGAACAAAGGGCAGAGAATCATAGAATCGCAGTAACATGGAATGTGTTGGGTAGGAAGGGTCCTGAAAGATCACAGAACCATGGAGTGAGTTGGGCTGGAAAGGTCCTGAAAGATCATAGAACCATGGAATGGGCTGAGTTGGGAGGGACCTTGAAAATCACAGAAACAGAGAATAGTTGGGTTGGGTTTGGGTTCGGAGGAGTCTTGAAGGTCACAGATCCAGGGAATCACAGCGCTGTAGGGTTGGAAGGGTACTTCAAGATCACAAAGCTTTGTTGAACCTCATTAGGTTCTCATGTGTCCACTTTCTGCTTCTGTCTGGGATGGATCTCTTCCTTCCTTTGTGCCAATTGCACTGCTCAGCTCAGTGCCAGCACCAAACTGCTGAGGGTGCGCTGATCCCATCATCTGTGTCATGGATAATGGTGTTGAAATCCCAGATGGACCCGAGGGGACACCACCTCTGTCCCACTTCCACCGGGACACGGAGCCATTGACCCCATTGGCTGTATTATGGGCACACCATGACTTCACCCCATAGCGCTGCCACAAAGCTTTCTGCACAGTTTTCACAACTGATGGGTCTGCTTGGAAGCCCTAAAGCAGCACAGATGTCTCCTGTTGATATCCACCCGCTCATCTTCCATCATCCAAGGAACCCTGGGAAATGTATTACTCTGTGTTTTCTTGCAAATCCCATTTCATGTTGGGCATCACCTGGCTGTGCCTCACCGGGACATCGTAATTTGTCACATCCTCATGATAGAGTGGAGCTCAACCACATTCCTCTGCACCTCCAGAAACCATTCTGTAGACCTCAAAGGAGCTCTTGGCCTTCTGTGAAATTATTTCTTCCCCATTCCCAG
Seq C2 exon
GTCTCGACCATCAAGAAAGGGCACCTGAAAACAAGAAGCGCTACAGTGAGATATTCCGCAGCCTGGATGCCATAGAAATCTCAATTGGAAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022319:ENSGALT00000035892:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]