MmuINT0071683 @ mm9
Intron Retention
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72332586-72333757:+
Coord C1 exon
chr8:72332586-72332719
Coord A exon
chr8:72332720-72333672
Coord C2 exon
chr8:72333673-72333757
Length
953 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CTTACACTTCCCTCCCCCAGAGC
3' ss Score
10.15
Exon sequences
Seq C1 exon
ACCACTGGGTCGGCAGAGGCAGGAAATCGGGCTGGTCCCGGGCGGCGCGCAGCCCTGTCCCTTTCTCAGCATTGCCGCGCGTTCCCCACCCCACCCCCTGCCCCCGGGCATCGCCATGGACTCAGCGGAGACAG
Seq A exon
GTACGGGGTGGGGACCGAAGGGGGGGGGCCTCCCACCACCGCTCCTCAGTTCCTAAACCAGAAAACCCAACTTACCCCTGAGCTATCTGACAGCCGGGAAAGGAGTACTGACAGGGGAAGGAACGAGGGGATCCCCGAGCACCTTGGAGACCCCTGAAGCGCACAGTGCTCACGACGCCAGCCTTCAGCCCTCGGATTGCCCGCCAGAGCGGGCACCCCGGATGCCTGGGGGAAGGGGCCCAGGAAGGGGAAGTGGCCGCTTCTGCTTCTGATCGTAGGATGGATGGGGGCAGGGTGTCATGGCCAATATTCCTGCAGGTAGCCCCGAGGCATCAGGCTAGGGGGCGGCGGCAGAATTGTGGCTAGAACTGGGTTATGTTTCCGGCTGTCTTTGTGTATCGAGTGTCATTCAGTCCTGTCCCTCGTGGTTTCAGCGGTACTCGCGTGTGTTTATACCGCAGGCTAAGTGCCTGTGTGTCCCACGTGCTTTTCCATCTGTCTGGCCTGGGGTCCATGTGGCTCCATTGTCAAGCCAGCCCTCTACTCCAGCATTCATATGGCAGCTGCATCTGTTTCCTTCCTTTGCTTATGGGTCCTCCCATGCATGGTGTCCCTGTGGCTGTGAGCAAACGCTTCTCTGAGATTTTACCTGGATCCATCTGTGGAATCAGAAATGACCCCACCGAAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCCCCTCCCTCCCCCCTCCTTCTCTCCCCTCTCCGCCCGCCCCCCTTCCCACCTCTGCTTGAGAGTGGTTGTTGAGGTACATTCGGATTGCTTTGCCACTACTAATGGGTGGAGAGAGACACTGGTTGGCTCATGTTTTCTTACACTTCCCTCCCCCAG
Seq C2 exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-Gmip:NM_198101:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGGGTCGGCAGAGG
R:
CGTTCCCCAATGATATCTCGAGG
Band lengths:
217-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: