RnoINT0065848 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21361807-21362955:-
Coord C1 exon
chr16:21362828-21362955
Coord A exon
chr16:21361892-21362827
Coord C2 exon
chr16:21361807-21361891
Length
936 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTTATACTTCCCTCCCCCAGAGC
3' ss Score
9.9
Exon sequences
Seq C1 exon
ACCACTAGGCCGGCAAAGGCAGGAAATCGGGGCTGGTCCCGGGCGGCTGCCCTGTCCCTATCTCGGCTCTGCGCGTTCCCCACCCCACCCCCTGCCCCGGGGCCTCGCCATGGACTCAACGGAGACAG
Seq A exon
GTAGGGGGGTGGGAAGCAAGGGGGGCCTCCCATCACCGCTCCTCAGCTCCTAAACCAGGTAACCCAATTTACCCGAGCTATGTGACAGCCGGGAAAGGAGTACTGGCAGGGAAAGGAACGAGGGGATCCCCGATCCCCTTGGAGACCCCTAAAGTGATCAGTGCTCAGGACGCCAGCCCTCGACCCTCAGATTGCACGGCAGAGCGGGCACCCCGGATGCCTGGGGGAAGGGGCCCAGGAAGGGGAAGTGGCCGCTTCTGCTTCTGATTGTACGATGGATGGGGGCAGGGTGTCATGGCCAGTATGCCTGCAGGTAATCCCGAGGCATCAGGCCAAGGGGGCGGCGGCGGCAGAATTGTGACTAGAGCGGGGTTATGTTTCCGGCTGTCTTTGTGTGTCGAGTGTCATTCAGTCCTGTCCCTCGTGGTTTCAGCCATCCTCTCGTGTGTTTATACGCAGGCTAAGTGCCTGTGTATCCCACGTGCGTTTCCATCTGTCTGGCCTGGGGTCCATGTGGCTCCATTGTCAACATTCATATGGTAGCTGCATCTGTTTCCTTCCTTTGCCTATGGGTCCTCCCCTGTGTGGTGTCTCTGTGGCTGTGAGCAGCCGCCTCTCTGATTTTGCCTGGATCCATCTGTGGGATCAGAAATGACCCCACCGGAGCTCACTCCCTCTCTTCCCTCTTAGACTCACTCACTTGTTTATGTGTGTGCTCGCTCTGTCTCTCTGTGTCTCTGTCTCTCTGTGTCTCTGTCTCTCTCTCTCTCTCTGTGTCTCTCTCTGTCTCTCTCCCTCTCTCTCTCCCTCTCCCTTTCTCTTTCCTTCCCACCTCTGCTTGAGAGTAGTTGAGGTACGTTCGGAGTTGCTTTGCCACTACTGTGGGTGGAGAGAGACACTGGTGGGCTCATGTTTTCTTATACTTCCCTCCCCCAG
Seq C2 exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTAGGCCGGCAAAGG
R:
CGTTCCCCAATGATATCTCGAGG
Band lengths:
212-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]