BtaINT0067418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3618137-3618405:+
Coord C1 exon
chr7:3618137-3618243
Coord A exon
chr7:3618244-3618315
Coord C2 exon
chr7:3618316-3618405
Length
72 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACTGGCCTGCCCCTCCCTAGGAG
3' ss Score
9.96
Exon sequences
Seq C1 exon
TTCCCCCCTGGACACAAGAAAGAAGCTCTCTGGAGCACCCCCTCCACAGCTGGATGAGAGTGCAGCTGAGCCAGGCCCTTGGGAAGACACAGGCACAGGCTGCCAGG
Seq A exon
GTGAGTACCGTGGAAGGCGGGCAGGAGTGGTGTGGGGAGAAGGCCACACCTGACTGGCCTGCCCCTCCCTAG
Seq C2 exon
GAGCTCCGGGCCCCACTGTGGGCAGCGATGTGGACAGTGTGGGCGGCAGCAGCGAGTCTCGCTCCCAGGACTCTCCCACTTCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144:ENSBTAT00000020147:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGGAGCACCCCCTC
R:
ACTGGAAGTGGGAGAGTCCTG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]