HsaINT0069905 @ hg19
Intron Retention
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19747516-19747838:-
Coord C1 exon
chr19:19747726-19747838
Coord A exon
chr19:19747606-19747725
Coord C2 exon
chr19:19747516-19747605
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATTGACCTGTGCCACCTAGGGA
3' ss Score
4.39
Exon sequences
Seq C1 exon
CTCCCCTCTGGACATCAGAAAGAAGCTCTCTGGGCCTCTTCCTCCAAGGCTGGATGAGAATTCAGCTGAGCCAGGCCCTTGGGAGGATCCGGGCACAGGCTGGCGCTGGCAAG
Seq A exon
GTGAGTGCAATGAGGGCCAGGTGGGAGTGGTGCCAGGAGTTCGTTCCACCAACACATAGGTGGGCTGCAGGAGTGGGGTTTGTGAGCAGGGGACCATCCTTATTGACCTGTGCCACCTAG
Seq C2 exon
GGACTCCAGGCCCCACTCCGGGCAGCGATGTGGACAGCGTGGGTGGCGGCAGCGAGTCTCGGTCCCTGGACTCACCCACTTCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-GMIP:NM_016573:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCAGAAAGAAGCTCTCTGG
R:
CTGGGCTGGAAGTGGGTGAG
Band lengths:
194-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)