GgaINT0001320 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:28142045-28142370:+
Coord C1 exon
chrUn_random:28142045-28142125
Coord A exon
chrUn_random:28142126-28142283
Coord C2 exon
chrUn_random:28142284-28142370
Length
158 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAAC
5' ss Score
3.45
3' ss Seq
ACCATATCCACCTTCGGCAGGTG
3' ss Score
6.81
Exon sequences
Seq C1 exon
AGACACCACTGCATTATACGGGATGCAGCAAGGATGGGAGCACCCCAGAAGATACACCCAGAAGGCAGTTCTCCCCTAACG
Seq A exon
GTGAACAGAGTGGGTTGAATTGAAGAAAAAACAATTTTTTTATTTCTTATTTGAGCTCCTATAGTTTAATTTAGATGCTGCTGTTATCCGGTTGCAATTCTTAGCCGTTACCCCAAGGTTTGCTGGGGATGTTTGGTCACCATATCCACCTTCGGCAG
Seq C2 exon
GTGTGAACAAATCCCTCTGCAGCGACACGGAGAGCCTCAGTGGGAGCTGTGAGTCACGATCCTTGGACTCTCCCAGCTCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013314:ENSGALT00000021745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGCATTATACGGGATGC
R:
GGACTGGAGCTGGGAGAGTC
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]