MmuINT0071686 @ mm10
Intron Retention
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69815434-69815691:+
Coord C1 exon
chr8:69815434-69815543
Coord A exon
chr8:69815544-69815613
Coord C2 exon
chr8:69815614-69815691
Length
70 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATTGACCTGTCCTCACGCAGGAA
3' ss Score
8.3
Exon sequences
Seq C1 exon
TTTCCCTCAGGACACAAAAAAGAAGTTTTCGGGGCCTCTACCTCCAAGGCTGGAGGAGGAGGGTTCCCCTGAGCCTGGCCCTTGGGAGGTTGCCAGCTTAGGCAGCCAGG
Seq A exon
GTAAGTTCTCTGAGGCCTGTGGGTAAAGGGCCTGGGCTTGGGCCAGCCTGATTGACCTGTCCTCACGCAG
Seq C2 exon
GAATCCCAGGCAGTGATGTGGACAGTGTAGGTGGTGGCAGTGAGTCCCGGTCTTTGGATTCTCCCACTTCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246:ENSMUST00000036074:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTTTCGGGGCCTCTACC
R:
CTGGGCTGGAAGTGGGAGAAT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types