BtaINT0067433 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3616736-3617071:+
Coord C1 exon
chr7:3616736-3616816
Coord A exon
chr7:3616817-3616900
Coord C2 exon
chr7:3616901-3617071
Length
84 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CGTCCCTCTTCCGCCCCTAGAAC
3' ss Score
11.79
Exon sequences
Seq C1 exon
CCCTTGGCTGCCAAACGGACTGAGATTGAGAAGTGGCGGAAGGAGTTCAAGGAGCAGTGGATGAAAGAGCAGAAGCGGATG
Seq A exon
GTGAGGCCTAGGGTTGCGGGCTGGGAAAGCGGGTTGGGGGAGGAGATGAAGAAGCCGGAAGACTCGTCCCTCTTCCGCCCCTAG
Seq C2 exon
AACGAGGCGGTGCAGGCGCTGCGGCGGGCCCAGCTCCAGTACACGCAGCGCAGCGAGGAGCTGCGGGTGCGTTCCCAGGTATCGCCGGAAGACCTGGCTCTCCAGGCCTCACCAGGCCCCAACAAACAGCAGGAGCGGCGGCGGCGCTCTCGAGAAGAGGCCCAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144:ENSBTAT00000020147:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.491
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCAAACGGACTGAGATT
R:
AGGTCTTCCGGCGATACCTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]