HsaINT0069920 @ hg19
Intron Retention
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19748968-19749291:-
Coord C1 exon
chr19:19749211-19749291
Coord A exon
chr19:19749139-19749210
Coord C2 exon
chr19:19748968-19749138
Length
72 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ACCTTCTCATCATCCCCCAGAAT
3' ss Score
9.76
Exon sequences
Seq C1 exon
CCCCTCGCCGCCAAACGGACTGAGATTGAGAAGTGGCGGAAGGAGTTCAAGGAGCAGTGGATGAAGGAGCAGAAGCGGATG
Seq A exon
GTGAGGCTTGGAATTGGTGGAAGGGTAGGGTGAGAGAGAGGCCGGGACGCTGACCTTCTCATCATCCCCCAG
Seq C2 exon
AATGAGGCGGTGCAGGCACTGCGGCGCGCCCAGCTGCAGTATGTGCAACGCAGCGAGGACCTGCGGGCACGCTCCCAGGGGTCCCCTGAGGACTCGGCCCCCCAGGCCTCGCCGGGACCTAGCAAGCAGCAGGAGCGGCGGCGGCGCTCGCGAGAGGAGGCCCAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-GMIP:NM_016573:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTTCAAGGAGCAGTGGA
R:
CTCCTGCTGCTTGCTAGGTC
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)