MmuINT0071701 @ mm10
Intron Retention
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69813616-69813952:+
Coord C1 exon
chr8:69813616-69813696
Coord A exon
chr8:69813697-69813781
Coord C2 exon
chr8:69813782-69813952
Length
85 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
GTCCTCTTGCTGCCTCCAAGAAT
3' ss Score
3.84
Exon sequences
Seq C1 exon
CCTCTGGCGGCCAAAAGGATGGAAATTGAGAAGTGGAGGAAGGAATTCAAGGAACAGTGGCTGAAGGAGCAGAAGCGCATG
Seq A exon
GTAAGGCCAGGCGTGGGTGGGCCCTGCCCGGAAGAACAGAGTCCTCTGCAGGCCAACGGCTTATGGTCCTCTTGCTGCCTCCAAG
Seq C2 exon
AATGAGGCAGTGCAGGCACTGCGGCGCTCCGAGCTCCAGTACATTCAACGCAGAGAGGACCTGAGGGCACGCTCCCAGGGGTCCCCTGAGGACCCTCCTTCCCAGGCATCTCCTGGATCCAACAAGCAACAGGAGCGCAGACGGCGCTCCCGAGAGGAGGCACAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246:ENSMUST00000036074:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAACAGTGGCTGAAGGA
R:
CGCTCCTGTTGCTTGTTGGAT
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types