RnoINT0065866 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21357671-21358007:-
Coord C1 exon
chr16:21357927-21358007
Coord A exon
chr16:21357842-21357926
Coord C2 exon
chr16:21357671-21357841
Length
85 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ATCCTCTTATTGTTTCCAAGAGT
3' ss Score
5.18
Exon sequences
Seq C1 exon
CCCCTGGCGGCCAAAAGGATGGAAATTGAGAAGTGGAGGAAGGAATTCAAGGAACAGTGGCTGAAGGAGCAGAAGCGCATG
Seq A exon
GTAAGGTCAGGCGCAGGTGGGCCGCGCACGGAAGAATGGAGTCCTCTGCGGGCCACGGGCTCATGATCCTCTTATTGTTTCCAAG
Seq C2 exon
AGTGAGGCGGAGCAGGCACTGCGGCGCTCGCAGCTCCAGTACATTCAACGCAGAGAGGACCTGAGGGCACGCACCCAGGGATCCCCTGAGGACCCTCCTCTCCAGGCATCTCCTGGATCCAACAAGCAACAGGAGCGCAGACGGCGCTCCCGAGAGGAGGCACAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAACAGTGGCTGAAGGA
R:
CGCTCCTGTTGCTTGTTGGAT
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]