BtaINT0067837 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95870611-95871381:-
Coord C1 exon
chr11:95871211-95871381
Coord A exon
chr11:95870698-95871210
Coord C2 exon
chr11:95870611-95870697
Length
513 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CAAAACTTACTTTGTTTCAGGCT
3' ss Score
6.93
Exon sequences
Seq C1 exon
AAAATTAGACCTGATAATGAGCTTTTTGAAGTCCGAGAGAAGCCTGGGCCTGAGATGTCAAACTTGGCACCTTCGGTCACAAATAATGCTGACCTGACTGACGCTCGTGAGATCAACTTCGAGTACCTCAAACACGTGGTTTTAAAATTCATGTCCTGTCGCGAATCTGAG
Seq A exon
GTAAAGGGCTTTTGAATTGCCCTTTGGGTACTGAGTTCCACCTGGTTCATTTGTCTGGGCCTCACCTGGCTTCCCACCAGTTCCATTTCTTTCTTCCTTTCCCCCAGTCCACTTTGACCACAAGTGTGGACACTTAGTCATGTCTCCAGCTGGCATTGACCTGCTGGTTGAGCAGCCCGCAGGGGACTCCTAGTAGGGAACTGGCTCCTGGGAGATGGGGGTTGGATGCCGAGGCCAGGGTCCAGGGAGCTGCATCTGTCCAGCGGTCCTGCCTCCTGCTGAAGAGCAGGGAGCTGCCATGGCCGTCCTGGTGATCTTGCCAGTCCCCAAGTAAGAGGTAGGGGAGAAGAGCCAGCAGCCCTCAGAATGCCCACCTCCACCCTCTATGTGGTCCTTGCCGACCAAGCCGGGAGTGCACCAGAGGAGCAGGACCGGGAGATGGCTACCAGTTAGCTGCTGACCGCCTGCTAACTCCCATCGAGGCCCATGGCAGCAAAACTTACTTTGTTTCAG
Seq C2 exon
GCTTTTCATCTTATAAAAGCTGTGTCAGTGTTGCTGAACTTTTCACAAGAGGAGGAGAACATGCTCAAAGAAACCCTGGAGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
NA
C2:
PF0146515=GRIP=PD(48.9=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACCTGATAATGAGCTTTTTGAA
R:
CTTATACTCCAGGGTTTCTTTGAGCA
Band lengths:
254-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development