GgaINT0126284 @ galGal3
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10297362-10298584:+
Coord C1 exon
chr17:10297362-10297532
Coord A exon
chr17:10297533-10298497
Coord C2 exon
chr17:10298498-10298584
Length
965 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
GACACTGTGGTTTCTTTCAGGCA
3' ss Score
9.15
Exon sequences
Seq C1 exon
AAAATAAGGCCGGACAGTGAAGTACCTGAACTACGTGAAAAAACAAATTCTGAAGTGCCTAATGCTTCTGTGACTGTCACAAACAACTCGGATTTAAATGACTCAAGGGAGATAAACTTTGAGTACCTTAAACATGTTGTACTAAAATTCATGTCCTGCCGGGAGTCTGAG
Seq A exon
GTAAAGAATCCAAGGAAGACGAGTTGGTATGCTTGTCTTCTAAGTCTCTCTGTCTTTAGAAACTGGCACCTGGTAAGAATGCTTCTATGTCAGCTCAGAATTTTTGCACTTAAAAGGTAATTAACTGATGCAGCACAATAAAGCAAAATAGTATGTTTGGGAGTACAGATCATTAGAAACTAAGTGAAAGGTGGGAGGTAGTTATGTCTAGAAGTTAAAGACCTGAAGCTGCAAGGCATTCCCTCTGTACTATTCTAAAAAGCATATGGAGTATATGTGATTAAAGTAGTTGTACATTTAAGAAAGGTAGGAAAAGAAACCAAAAAGGACATAAAGCACATGGTGTTGAGGTAATACTCATAAGAGATAATTCCTTGTGCATTTGGAGCTCCTTTATGTTCTCTAAGTTGTGTTGAAAAAGTTACAGGTAGAAAGAAGCCATGCCAAAATATGCTTTTCTTAATTATAGGTCAAGATGGTAGGTAGGATAAAGAAATAGTTGTGCAGCTCCACAGTATCCAGAGTGTTAGACTCCTTTATGAGCTCTGCGTGATGTATCTCACTTGCACTCTTAGTACTATGCAGTTAATACATGGTGTATGTAAAGCAGCATGATTCTTACCTGTCTACATGCTGCTACAGCTTTTTAAAACTTAACCCCCCCCCCCCCCAAAAAAAAAAAAAAAAACACAGGATGCTGTAGGAGCCAGGCTTCTTCTCTGTTTTAACCTTTTGTTTTCTTTCCCCAAAATATGCAAGCTGCAGAAAGCTAGGAAATGCAATCAGAAGAAATAAGATACAGGCTGTCCTGGTCTATTGCAATGGGGCATAGTGGAAGGTTATACTGTTCTGCAGTTGTAACTAAAAAGTCTGACTGAGCCTGCAGGAAAAACTGTGTTGCACTGTAGTCCAGAACACAGAGGCTGAGAGCATCAGAAGCAGTAAGACACTGTGGTTTCTTTCAG
Seq C2 exon
GCATTCCATCTTATTAAGGCTGTTTCTGTGTTACTGAATTTTTCCCAAGAGGAAGAAAATATGCTTAAAGAAACTTTGGAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
NA
C2:
PF0146515=GRIP=PD(48.9=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGCCGGACAGTGAAGTAC
R:
CTTGTACTCCAAAGTTTCTTTAAGCA
Band lengths:
254-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]