DreINT0073762 @ danRer10
Intron Retention
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41463753-41467044:-
Coord C1 exon
chr8:41466784-41467044
Coord A exon
chr8:41463840-41466783
Coord C2 exon
chr8:41463753-41463839
Length
2944 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTTTCTGCTTCTCTCTTCAGGCT
3' ss Score
12.14
Exon sequences
Seq C1 exon
AAGCTGAAACCAGATCCTGACTCTGAGATGAAGGAAAGACTTCAGGATGGGAGACAGGAGAGATCTGCAGAAAAGACCGTCTTGGAGACACCGATGCCCACCGCAGCTCCAAGCCCAGCTCCAGGACTCAATCAAACCCCAGGCCCAATTACCCCCAACACCACCGTCACCAACAGTTCAGACATCACAGACACCAGAGAAATCAACTTCGAGTACCTCAAACACGTGGTGCTGAAGTTCATGTCATCCAGAGAGGCAGAG
Seq A exon
GTAAGGTTTGATCCCTATCTGATGAATGACTTGCGATTGGCTTAAAACAGTGGTTCTCTAACTGTGGTACGTGTAGGAATGAAATATGGCATGTACATGCTGCATATATTTCAAAATGTATCAAAAATGATGTATATATTATGCCATATATGACATATAGCCTATATTTCTGAAGTAATTTGCCACATTTTTTTTAACTGTGCAGAGTTGTAGCTGCTTTACTGGGCCTACTACACTACTGTATTTCAATACTGCTCATTTTGGTGGTACTTGGAGAGACAATTTTTTTCTGAGGTGGTACTTGATGAAAAAAATTTGAGAACCACTGGCTTAAAAGAATGGCCCATCAAATGAATCACTTCTCAAAAGAGTTCATTTGAAAACCTTATGACACGCATTACAGCTGAACTATTGAACATAAAATTGCATATCAGAAATCTATCTACATCAATTCCGAGATTTTCAAAATGCACCACTTTTCTCACTTGAATGAATTCTGAGCTTAGATTTTAACAACAGATGGTGCTCTAGGCTAGGCAATCAAATACTGAGTCATATAAGTGGGCTTTTATGTCATGAGATTAGTGTTAATACAACTCCTTATGAACACTCCTTAAACTTTAGCTAACTTTATTAATGATTATTTTAGTTTCAAGTGGTATTTGTAAGGAATTGGTAGCAAGCAGAGTACAGACAGCTTTTACAAAAAAACACATCAGTAAAGTGCATGGTTATTATATGCAAAAACATATTTCCTTAATAAACAAATTTGGTTTATGTTTTCTGCTTTTGCTAAAAATGTACACTAAGGATGTTTAACTAAATATACAGCATGATCGGTACTTTGAAGATGTTTGTCTGAATTAGTACGACTGTGATAATTAATCGACATCCATATTTTTAATCAACAATTGCTTTTATATTATTTGAATTATACCTTATATATATATATATATATATATATATATATATATATATATATATATTAACACTTTGACTTAAAGGTGCAGTGGGTGATTGTCTTCAGAAACATTTTTTGTTGTGCTGGTTGAAAGTCTCTTCACATTCCAATAGTACTGATTAAATTAAATGGTTTAATGTATTTATATGTATTTTTATATTCTAGGTGAGGCATAAGACTAAAAAATGTTCATCCAATAAAAGATTATCTTGCTGATAATTCCCCTAATTCTGATAAGTAGCTCAACAAATGTTGATTTGTACATCTGTGCACCCGTTCACTAGGCATAGGCCAGTATAAGATACTGAAGGTATGATAACCTTGGATAAAAATATCAGAGTACTGTGCTCTAAAATATATTCTTTTTCAGTGTCTGGGTAAAAAACTAAAGTTCTTTTCCTTTTGAAAATAATATATTTTATATTTTGAAGCTATCATATGTTTTGGAGCAGTAAACATGTCAGGCTAAATAATTCAAATGAATTATTGACTAGTTATTGACTAAAAACACAGATTTCTTCACAATTTAAAACGGCATCTTTGGATATCTTATCTGCTGAAGATAGTGTTGTCCTAAATGACTTAAAACAAATTTTAAATAAAAAATCTTACACATACCTTAGGAACGGTATAGGGGAAAATGTTTGCAGATTTAAAACCTTAACTTTTCCCAGGTTCACATGCACACCAGAGAGAGACAGCAGTAAAAACAAACGCTGAATCAATACTTTTTAAAATCCTGAATCAATATTGGAGTTACTTTTGTAGATTGGAGGAAGGATGACACTATGGCTGAAGTATTTCTTTTAGACAGTTAATGTTATGTTTTAAAACTATTTTAGTCACGCAAACCTTATGTAGATTGTGTTGTGTTATGAATAGGTTATATGCACAGAGGTGTTGTTCAGCCACAGAAATCTTCTAGTGAAAGATTGATGTGCCTATTTTCAGTTTCATTAGGTAAATTTTACAGCACCAATAATATAGGTTTTTATTTAGTTTAACAACAAAACCTAAGTAAATATTGCTATTCCTGCTTTACTGGGGTGAACAATGACAAACTGTGACGCTCTCTCTATATTGTTTACCATGCTACTCTGAATGTATGGTTTGAAATGGCACGTAAGTATAGTTTAGCCCTGCACTCAGCCAGCCAAGCAACACAGGGACTGTGTTTTCAAAGCTATTATGCTAACGCATAGCATTTTGACCAATCACTTTCTGCAACTTTAAATAACCACCGTAAACTAATTGCAAACAACTAATTTACGAATATTTGTTTAAAAAAAATTTCTCACTTGAGTAATGAAATATTTTGCATGTGTAAACAATTCGATTGTGTGTGTGTGTACATTTATGTTTTATAGCCAATATAAGGAACGTCACATACATTTATCATAGAATAGTTCACAGGTAACATCAGTTTCACTTTCTCCTCAATACAACATCAAGTTTCTTGCTGAATATAAGATCGATTTGTCAACCATTTATGACCATCAGTTTCTCAATAATAATGGGATAAATTCAGAAACATTATGGAAGAAAAGATTGATTGGAGTAGCCTGATTTCTCTCAGAAAGCATAAAGCGAGTGTGGACATCTTTATTGGTAAAGGTATTTAAAGTTCTCAAATGTTGTTTCATTTTTACCCTGAGGAAGGCAAGTTTTGCTGAAATGAATAGGTGCTGTTTTTAAATAATAGCCATGTTAATAAATGCTTTTTATTTTTTTTTTACTTATTTTTCAACTTATAATTTCATTGTTTAAATCTTGTTTCAATGATCTATGGTAAGCTAAGCTAAATGTGCTCCGGCTAGACCCAGAGACCAGCTTAATGGATTAAAAAATGGTAAAACTCGTCTAGTTAACTCTAGGGGAGTTGTAAAATTTGCCTATTTCTTTAACAAGCACATAGCAGTGATTTGATTGCTACTTGAATGAATGCTCCCATGAGTGCTCGCCTCTTTCTGCTTCTCTCTTCAG
Seq C2 exon
GCTTTCCAGCTCATCAGAGCCGTTTCTGTGCTCCTGCATTTCTCAAAAGAAGAGGAGGACATGCTCAAACAGACACTGGAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979:ENSDART00000098578:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=24.1)
A:
NA
C2:
PF0146515=GRIP=PD(48.9=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]