MmuINT0072144 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39018990-39019653:-
Coord C1 exon
chr2:39019483-39019653
Coord A exon
chr2:39019077-39019482
Coord C2 exon
chr2:39018990-39019076
Length
406 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AAAAGTGGGTTTTGTTTCAGGCT
3' ss Score
5.37
Exon sequences
Seq C1 exon
AAAATCAGACCTGACAGTGAGCTTTTTGAGGTCCGGGAGAAGACAGGCCCTGAGATACCAAATATGGCCCCTTCTGTCACTAATAATACTGACCTGACTGATGCCCGAGAGATCAACTTTGAATACCTTAAACATGTTGTTTTAAAATTCATGTCCTGTCGAGAATCTGAG
Seq A exon
GTAAAGGCTTTCAAGCTGCTTTTTGGGGGATGGTGGTGGGGTGGTTTGTAGAGTTCTGCATGGCTTCCCTCTCAGCCCAGTGCTGCCTCCTATCCCTCATCCTTCAGTACTGACCTGCTGAGCAGATCATGATGGGAAGTGGCTCCTGGGAAGATATGGTTCCCTCTCTGAATTCTAGCTTGAATGCTGCTGAAGCTAGAGATGTATAAATATTCTGTCCACCATGAAGAGCAGGGTAGGATGTTCTCTTGGCTCTCAGTCCCCAAAGTGAGAGATGACTCAAAGCTGGAGCTACACCCATCACCTCATCCTCATGAACCAAGGAAACAAGAATGCTGCCATTTAGCCCCTTAACTGCCTGCCTACCCCACAAGGCCTATGGCAGCAAAAGTGGGTTTTGTTTCAG
Seq C2 exon
GCTTTTCATCTCATAAAAGCAGTGTCAGTGCTGCTGAATTTCTCACAAGAAGAGGAGAATATGCTCAAAGAGACTCTGGAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
NA
C2:
PF0146515=GRIP=PD(48.9=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCAGACCTGACAGTGAGCT
R:
ATATTCCAGAGTCTCTTTGAGCA
Band lengths:
254-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types