BtaINT0068403 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18971577-18972194:-
Coord C1 exon
chr7:18972119-18972194
Coord A exon
chr7:18971651-18972118
Coord C2 exon
chr7:18971577-18971650
Length
468 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGA
5' ss Score
1.71
3' ss Seq
ATCCATCCACCCACCTCCAGATC
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTACAACGTCTTCAAGATCCACTGGCTCATGGCAGCCCTGACTTTCACCAAGAGCGTCTCTCTCCTCTTCCACAGT
Seq A exon
GTGAGAGTCTGGGGCCAGGAACAGCGTGGGGTGGGCTGGAGTCTCTGGGGCCAGGAAAAAGCCCCTACAAGCCACTCCCCAAATCTCTGCAGACCCTGGGCTGGAGAGTTCCATATGTCCATCCGAGTGTCCATCCATTTTATCACTGTAGCCAGCTTTCCATCCAGCCCTTCTGTCCAGCTGTGATAGCCCACCTTTCAGTCTGACTATTTGTGGGTCCAGCTGTGACTATCAACCAGGCCGATTATCTAACTGTCCATCCGTCCGACTGTGACCTTCCCTCCATTGTCGAGGGTGTGACTGTCTCTTTCTCTGTCCACGCGCCATCCTGATTGGAACCGTCTGTTCCTGTCCCCTTCCTGGCCATCCATCCATCAGTGATTGTGCATGTTCCCAAACCACCATCCATCCACCCTCCCCATTCCCCTGTCCATCTGTCTGACTGTCAATCCATCCACCCACCTCCAG
Seq C2 exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCTGTCATGCACTACATCACGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291:ENSBTAT00000022987:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.3=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]