RnoINT0066923 @ rn6
Intron Retention
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9711726-9712232:+
Coord C1 exon
chr9:9711726-9711801
Coord A exon
chr9:9711802-9712158
Coord C2 exon
chr9:9712159-9712232
Length
357 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
ATACGTCTGCTGGCCTCCAGATC
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTACAGTGTCTTTAAGATCCACTGGCTCATGGCAGCCCTGGCGTTCACGAAGAGTGTCTCCCTACTCTTCCACAGC
Seq A exon
GTGAGCACACAGGGCCCGGTGACGACACAAGGGTGGGATGGGACCTCTGTCTGCCTGTGAGCCTTGTCTGCCTCATCTCTCTTCCGCTCAGCCCAGCTCTCGCTGCCCAGCCAGCCTAATGTCTGACCATCCCCACCACCTAACTCGTCTCTTGGGTGGAGGGAACCCACGGTGACTTGACTGTCACCTTCATCTCGCCCTGCCCACAGTCACCTACTTGTTCCATAATTATTCCCTGTGTTCCTAACTGCCTCCCCCATCCTCCTCCCTGACTAACTCCCTCCCCCATCCTCCTCCCTGACTAACTCCCTCCCCCCATCCTCCCCTCCGACTGCTCATACGTCTGCTGGCCTCCAG
Seq C2 exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCCGTCATGCATTACATCACTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128:ENSRNOT00000075403:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]