MmuINT0072836 @ mm10
Intron Retention
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57237424-57237926:-
Coord C1 exon
chr17:57237851-57237926
Coord A exon
chr17:57237498-57237850
Coord C2 exon
chr17:57237424-57237497
Length
353 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
ATGCATCTGCTCACCTCCAGATC
3' ss Score
8.64
Exon sequences
Seq C1 exon
ATACAGTGTCTTCAAGATCCACTGGCTCATGGCAGCCCTGGCGTTCACCAAGAGTGTCTCCCTACTCTTCCACAGC
Seq A exon
GTGAGCACACAGGGCCCGGTGACAACACAAGGGTGGGATGGTGAGATGGGACATCTGTCTGCCTGTGCACCTTGTCCATTTCATCTCTCTTCCGCTCAGCCCAGCTCTCACCACCAACCCTCCAGGAACATCCATTGGCCCAGTCAGTGCTGACTGTCCACCCTATTGTCTGACCATCCCCCCACCTAACTTGTCTCTTGGGTGGAGGGAGCCCGTGGTGACTGACTGTAACCTTCATCTCACCCCACCCCCAATCACCTGCTTGTTCCATAATTATTCTCTGTGTTCCTAACTGCCCCCCTCCCCTGTACCCATCCTCCTCTCTGACTGCTCATGCATCTGCTCACCTCCAG
Seq C2 exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCGGTCATGCACTATATCACACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823:ENSMUST00000005975:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types