HsaINT0071262 @ hg38
Intron Retention
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6732476-6733062:-
Coord C1 exon
chr19:6732987-6733062
Coord A exon
chr19:6732550-6732986
Coord C2 exon
chr19:6732476-6732549
Length
437 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGA
5' ss Score
2.98
3' ss Seq
GTCTGTCCATCCACCCCCAGATC
3' ss Score
10.43
Exon sequences
Seq C1 exon
GTACAGCGTCTTCAAGATCCACTGGCTCATGGCGGCCTTGGCCTTCACCAAGAGCATCTCTCTCCTCTTCCACAGC
Seq A exon
GTGAGAGCCTTGGACCGGGGAGCAGCGGGGGGTGGGCTGAAAGGCCCACCCGGGCCATCCCCCAAATCTCTGCAGACCCTGGGCCTGTGGGAGGGCCATCCGCCAGCTATCCACGTGTCCACCCATTTTACCAGTGTGGCCAGTCACCCATCCCCTCTGTCCACCAGTCCTGCGGGGCAGCTCTGTCCACCACTGTCCCTTGGTTCAGCTGTGACTGTCCGTCTCTGATTGTCCAACTATTCACCCCTTCAGCTGTGACTGTTCCCTCCATTTTTTCAGCCCCGATTACCAGTTTTGAGTCCCACCCACCGTCCTCATTATTCAACTTTCTGACCACCCATCTGATGGTGACGGTCCGTGTTCCTAATCCCCCACCACCACCATCAGCCTCCCACCCCTCTGTGCGCCTCACTGTCCGTCTGTCCATCCACCCCCAG
Seq C2 exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTTGCCGTCATGTACTACATCGCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734:ENST00000264080:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(20.3=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development