BtaINT0068495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22366796-22369183:+
Coord C1 exon
chr2:22366796-22367195
Coord A exon
chr2:22367196-22369017
Coord C2 exon
chr2:22369018-22369183
Length
1822 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TGTATTTCTTGTTTCTTCAGCCT
3' ss Score
7.66
Exon sequences
Seq C1 exon
TTGAAGCTTTATATCAAACAACATACCCAGAATATCTCCAGTACATTTACTTAGTGGCACCAATATCTCTGATGATGTTAAACCCTATAGGATTTATCTTCTGTGAAATTCAGAAATGGAAAGACACTCAGAATGCTTCTCAAAACAAAGTGAAAATTTTGGGACTTGGACTCTTGCGTGTGTTACAGAACCCAATAGTATTTATGGTCTTCATTGGCATTGCCTTCAATTTTATTCTTGATCAAAAGGTGCCTGAATATATGGAAAATTTTCTTGATGGACTTGCAAATTCTTTTTCTGGATCAGCTCTATTTTATCTTGGTCTTACAATGGTAGGAAAAATAAAGAAACTAAAGAAGTCAGCATTTGTTGTACTCATTCTTCTCATCACAGCTAAACT
Seq A exon
GTAAGTTTCACTTATTTACTTGGGGATTATACTTTGTGAAAGCCTTATTTAGCCAATTTGTTGGGATTTTCTCCTTTAAATAGTTCGATAGTAGTAGTCCCTCCTAATTGAAGGGTTTTAAAGGAAAATGTGATATTGGTGATTGTGGAAAGTCATTTCTGTGCAGGTTGTTTTTTCTATTTTACTGTTAAAGAATAAAGACTATGGTTTCCCTTCAGCTTTTATGTAATGTTCCCTAATACCTTCCAAGGTCCTAGTTTGATCATAGTTTTAAGGGAATTTTGCAGGATTTCTGAGTATTCTAAATCTATTAAAATCCTATTGGCTATGAAAGTGAAGTTACTCAGTCATATCTGACTCTTTGTGAGCCCATGGACTGTAGCCTACCAGGTTCCTCTGTCCATGGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGAGCAGATGATAAAAAGACCAAGTAGCTGAACATGAGGATCTGAACACAGGGATTTGGCTATGAGGAAAGCAATAATTTTGAACATACAAATTTATTTCATGAACTTAGGGGAAATATTCTAAAATTCTGAAGGTGGTTAAATTTTCTAAATATGGATAAGTCAGTAGTAGTGATTATTATCAACCATCTGATCCTAACCTGCAAATGAAAAGTTCTTAGCTCCTTAGTTAATAGTTCTTCAGCCTCTTTAGCTCTTTAGCCATGGAGTTATACTTCCTGGTGTAGGTGACATAATTTTACTATGAGATGATCCCAAGGCACTTGGGGCATATTTAACTATTGAATTTAGCTCCTCTGTAGACAAATTCATGGTAACTGTGCAATATGAAATAGTATCTATATTTTCAAAATAATAAAGATGAATATAAATTCTGAAGATTATTTATAGTGGTTTTATGTTCTTGGAAATAAAGTAATATTTAGTTTTGCCACAATAGTAAATACAGTTCTGACAATGACACTGATTACCAACCATTACTTATAAATATTTAAATATTCTCATTAAAAATTTTTTTCTGGTTCTATGATTCCTATTACATAATTTTGTCTTCTTTTAATTATAAAAATACATAAAAGTGGTTCTTGACTCCATCTGAGAGCATCTCTGTATGTCCTGCTGTGACAATATTAACCTTGGTTTTGTTCTTTTTAAAGGAAAGCTCCTTTAATTCACTACTTTTGATATGCTCTTTCTATGGAATCCTGGAGGATTTGTTTCATAATTGACTCTTCACCAGATTTGGATTTAACTAGCTTCTGCTCTACCTCAGTTATTATAGTTCCCTTTGCTAAACCTTTTTTCTTTACAAAGATAAAAAACTAATTGTAAGATACCTATTTCTCTACTGCCTTTTAGAATCTACTTAGTAGCATTGTTATTACCTGAAGCATTTAAAACCCTGATCATAATAAGGGTCAGCTGGGTTTTTTCCCCCAAAAAAATGTTTAGTAATTTTCTTTTAAACAAGTTTACTCAGCTTGTGAGTCTTTTTTTTTTTTTAACATTGCGATGAACTAATATGGAAAGCAAGTAACAGCAGTATAATTGCAACGCTTTACCAATTTTTTGCAAGAAAATTATTCATAGAACACAAAAAAAATCTGAGTTTCTTTTCCTCCTAATTCCTGATATTTAAAGACTATTGTTTTACTTTAAGTAGCTCCAAGTTGAATATTTGATTCTTTCAATAAAATGATACCTTCTGGGCAGAAGAAGAATAACCTAATGCCAAATTCACTAGAGCAATTTATTACTTGGGGACCAGCATGCTTCGATATCAAGCAATGATGTATTTCTTGTTTCTTCAG
Seq C2 exon
CCTGGTGCTGCCACTTCTATGCAGAGAAATGGTGGAACTCTTGGACAAGGACGACAGTGTAGTAAACCACACAAGTTTGTCAAATTACGCGTTTTTGTATGGTGTCTTTCCTGTAGCACCAGGAGTGGCTATCTTTGCAACACAGTTCAACATGGAAGTAGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(30.7=37.3),PF0354713=Mem_trans=PU(56.3=73.1)
A:
NA
C2:
PF0354713=Mem_trans=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTGTGTTACAGAACCCAA
R:
TAGCCACTCCTGGTGCTACAG
Band lengths:
357-2179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]