RnoINT0066975 @ rn6
Intron Retention
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60089271-60092248:-
Coord C1 exon
chr3:60091849-60092248
Coord A exon
chr3:60089437-60091848
Coord C2 exon
chr3:60089271-60089436
Length
2412 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TGCATCTCTTATGTCTCCAGCCT
3' ss Score
6.91
Exon sequences
Seq C1 exon
TTGAAGCTCTGTACCAAACCACATACCCAGAATATCTCCAGTACATTTATTTGGTGGCACCAATATCTCTTATGATGTTAAACCCTATAGGGTTCATCTTCTGTGAAATCCAGAAGTCAAAAGACACTCGAAATGCTTCTCAAAACAAAGCAAAAATTGTGGGACTTGGATTCCTGCGCGTGTTACAGAACCCGATAGTGTTTATGGTCTTCGTTGGCATCGCCTTCAATTTTATTCTTGATAAAAAGATCCCTGTGTATATGGAAAATTTTCTTGATGGGCTTGCAAACTCCTTCTCTGGGTCAGCCCTGTTCTATCTCGGTCTGACCATGGTAGGAAAAATCAGGCGGCTGAAGAAGTCGGCGTTCGTGGCGCTCATTGTCCTCATCACAGCTAAACT
Seq A exon
GTAAGTCTCGCTTGGGGAGTCTAGTTTGAGAACGGAAGCCTATTTAACCCAGCCATCCATTGCATTGCACATATTTTCCCTTTAAATACTAATCCCTGCTTATATCATTGTTGCGATTTAAAGAAAAATGGACTAGTTGGGTACTATTAAAAATTATTTTCTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAACGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAGGAAAAAAAATTATTTTCTTACTGTGGCATGCAGGTTACTTTTTCTACTTTGCTATCAGAAGATAAAGATTATCGGTTTTTATTCAGGCTTTCCCCCCCCCCATTCAGTGTATTTGTGTAAAGTTTACCTAATATTTTCAATATCTCAGTAAACATCATAATTAATTTTTATGCTTCTGGGCTTCGAACCCAGAGCCTTCTACAAGCTTGGTAGCTGTTTTACCACTGAACTATAACACATCCGTAGATCCTATTTGAAAAATAAATTTTGCAAAATTTTTAAGTCCATGAAAAATCATAAACACATTTTTTGTTTAAGTATAATAATTTTTAATATACACCATTTTTTTAAGAACTTGGGAATCATTCACTGACCATGAGTGAGTTTGGTTGAACATTCTAAATACAGGTAAACCAATATGTACATTTTTAGAATATTATCGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCCCCGAAAAAAAAGAACCAAAAAAAAAAAAAAACCTAGAATATTATCATTATTGGGATAATGTTATAGTGGAAATACTTTTTAGTTAATAGTTCTTAAGCTTATTGGCTTGTCAGCTGTGGAGTTGACATGATTTTACTGCATTATTACCCAAGGTTCGAGGGCACGCTTAAATGTGGAATCCAACTCTTATATAAGAGGTAAATTCCTGGGACCAGGACGTTACACATTTGTATTTCCAAAATGGTAATATGTTCTTCAGAATGTACGAGTTAGTATTTCCACTTGAATGCTTTTCAATAATAATAATGTAATTTCAATGCTAATTTAAAAATTTAAAGGTCTTTTATTCTCTTTAGATATTTGATTCCTATTTTTAAATTAAAAACAAAACAAAACAAACCACGCTGGAGAGATGGCTCAGCATTGATTCTTCTTTCAGACAATAGGGGTTTGAATTCCAGGAACCAAATGGTGGGTCCAGTTCGTGGTGGTGGTGGTGGGGAGGGGTGGGGAGTGGGGGGTGGTTCAGCTCCCTCTTCTGGCCTCTGTGGGCACTAGGAGCCGGGCAGTACACCCACACACATAAAAGACATACAATATATAAATTTATGAATAGGAATCACAATGCCTTAGCTTCATGAACTATCTATTACAACAGACATCTACGGGTAATTTAGGACTAGGGAGGCGGTTCAGTCTGTAAAGCGCTTGTTGCACAAGGATGAGGACCTGAGTTTGGTTCCGTAGCAGGCACGTAAAAAGCCAGACATCGTGGCATATGCCTGGGATTTCAGTGCTGGAGGATGGAGAGTCCCTGGGGCTTCCTGGTCAGCCAGCCTAGCTGGCTACAGGTTCAGTGAGGGAATCTTGTCTCAAAAAATAAGGTAGAGAGCAACTGAGGAAGACATCCGGTGTCAGCCTTCAGCCTCCACAGGCACACCTGTGCACATGTACACACATTCATAATGTATCTCCCCTGGGCGCTGCTGTGACAATGTATCGGCGAGCCAGTTAGCTTAGTGACTGTGCTATGTTCTTTCTAGAAAACAGTGAGACTAATAATAGACTGCTCACCAGATCTGACTTCTCTTTGTTTTCTGCTCCCCACAGTTGTTTCAGTTCCCTTTGCTAAATCTATCTTTACTTACAAATATCAAGAACTAATTATTAAGATGCCTAGTTTTTACTGCTTTGTAGGATTTTATTGTGCTGCACTGTTATCGTTAATCGGACCATTTAAACCCTTAGTCACCAAGTTCAGCTGCTTCAAAAAGTTTAGAAATACTCTCAAAAGAAGTTACGAAGATTTTCAACTCTCTTCCATCTAACATTTCAGTTAGCCAATAGAGGAAGCAGGAAAGCAGCTATGATTATTAACGCTTGCCTTTTTCTTTTTCCAAGAAAACTTTGTAAACGTCACTTTTCCCCTTTATGCTCCCTGATGTTTGAAAAGATTCCAGGACATTATTCTTGAAACGGCTCCTAGCTGAATTCTTGACTTTCAACAAAATGTCCAGCAGCAATAAAAGATGTGCCTGGAAATGCATATACTTTCTGGGCAGGAGAACAGTAGTAACATGATTCCAAATTCACCAGTGTAGTTACAGGTATTGGTGTTAAGCGCGTTCTGCATCTCTTATGTCTCCAG
Seq C2 exon
CCTGGTGCTGCCCCTTCTGTGCAGAGAAATGGTGGAAGTCCTGGACAAGGGTAACAGCGTAGTGAACCACACGAGTCTGTCCAACTATGCGTTTCTCTATGGCGTCTTCCCTGTGGCTCCAGGAGTGGCTATCTTTGCAACACAATTCAACATGGAAGTGGAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485:ENSRNOT00000025158:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(32.7=41.0),PF0354713=Mem_trans=PU(56.1=72.4)
A:
NA
C2:
PF0354713=Mem_trans=FE(31.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]