GgaINT0049021 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18084130-18085459:+
Coord C1 exon
chr7:18084130-18084529
Coord A exon
chr7:18084530-18085293
Coord C2 exon
chr7:18085294-18085459
Length
764 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTTTCCCCTTCTCTTTTCAGACT
3' ss Score
12.81
Exon sequences
Seq C1 exon
TTGAAGCTCTATACCAAACCACTTACCCAGAGTATCTCCAGTACATTTACCTAGTGGCTCCAATATCTCTTATGATGCTAAACCCTCTGGGGTTTATCTTCTGTGAAATCCAGAAGTGGAGAGACAATCGCACTGTGTCCCACAGCAAAATCAAGATAGTGGGCCTAGCACTCCTTCGAGTTCTGCAGAACCCAATTGTATTCATGGTCTTCATAGGAATTGCCTCAAACTTCATTCTTGGCCAGAAAATTCCCGATTACCTTGAAAATTTCCTCGATGGACTGGGCAGTTCATTTTCTGGCTCTGCACTTTTTTACCTTGGACTAACTATGGTGGGACAAACAAAAAAACTGACTAAGGGTATGTTTGTTGCACTGATCCTCCTCATCACAGCTAAACT
Seq A exon
GTAAGTTCAATTTATGTACTTTCATAATTTTGCTTTGTAAAGTGTTGCTGGATGTTTTAAGCTCTAAGTATATTGGTCATATGACTTTTCTCTCCAGTATTTCATCTAGATATTTTATTTGGTGCAGTTCTACAATTAGCATAATAGAAATATTTTGTCACTGTATTTAGACTGTAAAATTGGGAGACGTGCTTGAATATCATCAGAACAGCTAGCTAGGAAACTTACTACAAGTAAGCAGTACCATCTCGATTATAAGCTTTGTAAGAATGTGAGAAAAATGATTGTTGCTTATGGAAGCTTGTGCAAGGCTTACGTAGGAAGTCCATGTAACATCTGGGATATTGCTGAAGGCAGACAGAGGAGCATGAATGGAAGGTTGTTTTGTAGGATAAAACTTTTGACATGGGATACTTGGGCTTGCACCCTTGTTCTGTGTCACGTAAGTTCATGTAAGTTGATCTGATTCTCAAGGTTGTTGACTTCTGTATGGCTGCTGTTTCTTTAACAGTTGGAAATTAAGTTTTGCTTTTACATTTTGCCTTTCTAAATCTGAAGTTAGTGAAAGAATGCTTCTGCACCAATATGTAGTAAAATGTGTTGATAATCCAGGGATCAGTGTAGTTTCTAACACTTTTGTCTATGTTTTAACTTGTGACAAGAAAATTTGAAGCAGCTTATAGATGTCACGATTCCTTTTCTGCATAAAGAAGAGTCTATTGCTCTGACTTAAATGAATGACTTCTTTCCCCTTCTCTTTTCAG
Seq C2 exon
ACTTATGATGCCATTTCTCTGTAGAGAAATGGTGGAACTCCTGGACAAGAGCAGCAGCGCAGTCAACCACACCAGTTTATCGAACTATGCATTTCTTTATGGAGTTTTTCCAGCAGCACCTGGCGTTGCAATATTTGCAACTCAATTTAATATGGAAGTAGGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(27.1=31.3),PF0354713=Mem_trans=PU(56.3=73.1)
A:
NA
C2:
PF0354713=Mem_trans=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAATCGCACTGTGTCCC
R:
AAACTGGTGTGGTTGACTGCG
Band lengths:
358-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]