DreINT0074430 @ danRer10
Intron Retention
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2479309-2482921:+
Coord C1 exon
chr9:2479309-2479708
Coord A exon
chr9:2479709-2482752
Coord C2 exon
chr9:2482753-2482921
Length
3044 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCTCTCCGTGGTCTCTTTAGGCT
3' ss Score
10.01
Exon sequences
Seq C1 exon
TGGAGGCGTTATACCGCAGCACACACCCCGAGTACCTGCAGTACATCTACCTGGTGGCTCCAGTCTCCCTCATGGTCTTAAACCCACTGGGCTTCATGTTCTGTGAGGTTCAGCGGAGGAAAAACGGAGAACCCAGCCAGCAGAGCAAACTGCACGTGCTGGGTCTGGTGGTCCTGCAGGTGTTCAAGAACCCCATCGTCTTCATGGTGATGATCGGGCTCGTGTCCCACTTCCTGCTGTGCCAAAAAATCCCCGCCTTCATGGAGCAGTTTGTAGATGGTCTGGCCAACTCGTTTGGAGGTGCAGCGCTGTTTTATTTGGGGCTGTCCATGGTGGGCCAGCTGAAAAAACTGACCCGCACTACTGTTGTGGCACTGATTCTTCTTATTACAGCCAAACT
Seq A exon
GTGAGTCGGTCATTTCTTCTCTTTCTTTGAGGAACATTGTTTTTGAACATTTTGATCATTTTCTCATTAATTTGTTGGCAAACTGGTGATCCACAGCCCATCTCTGCTCCTTAAGGACTAGACCTTTCTTTGATGCTGCTTTTGTACCAAATCATAATTACAATCCCCTGACCTGTTGACATCACCTGTTACAAATCACATCATCGTTTTTTCCAATTTATATGATTACTAGCCATAAACTGCTCCTGTCACTGTTGCCAGAACCAAAATTGGAATGTGTCTTTATTTTGAAAAAATAAATAAATAAAAATCACTAGGAACTAGGCTTGCGCTGTATCCAAATACTTTCAAACCTCCTCCCTATTTCACTTCAGTATACGGTATTACCGTGCATAATAAAGTAAAATGATGTAAAGCTCAGACAGCGTCACCACTGTTGGCTTGGGCCTAAACCATTCATAAACTGAATACCGTATATGCGGATGCGCAGTTGCTCGGGAGTGATATTGTTAGGCCGCGCGCCCGCTCCCGTTCAAATTACACCAGAGTAACCAACCACTCCCCCACGGTAAGACAGTTGGTTGGGTCCCGTGGCTCCCGTGGTACAGCAGCGGGAATGCAGACCTCTAGTTCGTATTTACCACGTCTCCCTTCTCGTTTGGTTGTAACCCGAAATACTGCCAAACTGCAGAGGTTGGGGTTTTTTTTCGAGACCAGGTCACTTGGTGCGCGACTCGCCATCTTACTTCACCTCTCTCTTTATCCTCCACACCGTCCCATGATGACAATCACGCATACGCATTTGTAGGCATTTAATAAATAATATTTAATATTTTTATTTGTATTTTTTTAATTTAGAATTTAATACTTGTCTCCTATATAAGTGCATTGTTTTTATGATGGTAAAACGGTATTGAATCTGATATTATTTTTACATCCCGCGGTATAACATATTACCGTATTACCGCCCAAGCCTACTAGGAACACATTAAATAATGTTTGTTGTATTGTCTGCAATGAAATACAAGTCAAAGTAAATGTAGAAATGACTACTTTTTTATTTTTGTTTTCCATACTATCCCGACTTGTTTTGTTTTGTAGTGTTGTGGAAAAAAGATTCTGGTCTGCAAAATAATCTAAGTCTCTAAGTGAAACTTTTCAAAAAATGACAAAGTCTGAGATCTGCAAAGTCTTTAGGCAAAGCAGTTTATTGTTACAGCATCAGTAACAACAGAGACAGGTCATTCGAGTGTCTGCCGAACATAGGCATAGACTGTTTAAATACATTTCTGTGTCTTAATACTCCACCCAAATTTAAACATTATACACCTCCATCAACTTCTCCGCTAATAGGATCTCTCAGGTGCCCGCCGGGGTCTTACCCATGTCCAGTTAAGGCCTTTCCTTCCTGTTTCAAAAGCGATGCCAAAAAACAATGCTCAACAATATATCTTGTTCACTGTCCACTGAGCTGTCAACTGTAAGTTCAGCTGAAGTTCACGGGTACTCATATTTTTTAGATGTCATCACAAATGAGTGTGGGCCCATGTGCAGGTGCCTTATCATGAGTTACAGAACCGAACGCAGGTGTCCTTATGGCCTTGCATCCATAAATCTACCTTCATTGTGACATTAATGCTGCTGTTCTAATTTATCTTCTCATCTCTGACTGCATTTACACGGAATTACTTTTTCATTTACCAAAGCACTCATACGTGATGATAATGCTGCAGGTATGTGTAATAATACAATAGATAATAATAATAATAATACTGAAATCACTCAAATAAGCATAAAAATGAGAGTAATGCATTCATCAGAAATTCATCAAGACACAAAGAATTCCGCAACAGTGGCTGTATGTAAAATCTATTAAAACTTTTTTTGAACTTGTTTCTCTCAACATGGCAACAGAAGAGCTGTCAATCAGTAATTGGGAAATCAGAGTAGAGCTGTGAACCTACACTAGTCTCACGGTTCGGTTCGGTTATGATTATCATGCCATCGATTCGGTTCAATTCGATATTTCGGTGCATTACGGTGCATTGACGATGCTTTTATATTTTCTTCACAGCAGCAGCTCTTGTATTAAAATGTATGGATATATTTATATTTATATAGGCTATTATTTGTAATACAATTGTGTCATTTAATACAAACAGTCAGATATATAAACTGTAACTTTTTAAAAAAACGAGCATTTAGCAAATAATATAAACAAATATAAATATCCAGCTCAATATCTGATCCTTGTCTAGTTCTATTACACCCCTTTGTTTGGTTACACCCTCAACAAAAACGGTTGCGATTGGCTCTTGCGTGCTGCGCTTTTCAGATGAATGATAAGCGGCAGGCGGCAGCGGCGATCTCACAGCTGATCTATGATAGACACGGTGGAGAAAACTCTGCAGACATGCGCTCGTTTCTGTATCCAAAAGTAACGCTGTAAAACAGTCGAGAGAAAAAGAAAAGTCACGCCAGCAGGTCAAATGGGCCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAAAGAGAGAGAGACAGAGACAAAGCGAGAGCGAGAGAGAGAGAGAAAGAGAGAGATGGGGTAGGCTACTTTCATTCTCAAACACACACAGTGAAATTGTGCACAGTTCATGAGTATTAAGTAGTTAGAGCGTTGTAAATACTCGTGATCGTCTCTCTCGCGACAGAGCGCATATGAGGTAAATGACGTCAGTATTAACCGGTTATGATTATTACTGAACCGATACCTAATTGTCCGCGTCTGCATCGCGGTGCATTGAAAAAACTATTAATTTTGACACCCCTAAATCAGAGTAACTGTTTTTTTGTTTTATTTTATTTATTTATTCCTTTTTAATTTTGGAAGTCTTTTTTTTTTCTTTGGAAATTAAAAAGTTATGAATTACTTTACTAGTTACTTGAAAAAAGTATTCTGATTACATACTTGTAATGCATTACCCAACACACTGTTGATGACCAAACATTCTGTGCTTAATGTTAATGTTTTTGTGTTTTCTCTCCGTGGTCTCTTTAG
Seq C2 exon
GCTGATGATGCCTCTGATCTGCAGAGGGATGGTGGAAGTTTTGGACAATACAAACAGAAGTACGCTGAACCACACCAGTCTGTCAAACTACGCCTTTCTGTACGGAGTCTTTCCCACCGCACCCAGTGTGGCCATTTATGCAGCTCATTACAACATGGAGCTGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804:ENSDART00000147034:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(31.1=38.1),PF0354713=Mem_trans=PU(54.7=69.4)
A:
NA
C2:
PF0354713=Mem_trans=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]