BtaINT0068500 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22377117-22377391:+
Coord C1 exon
chr2:22377117-22377201
Coord A exon
chr2:22377202-22377300
Coord C2 exon
chr2:22377301-22377391
Length
99 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTAAACTCTCATTATTATAGGAT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GCCTTCTAGCAATTTCTTTATTTCTTTTGAAAAAGAGAGAAAGGGTACAAATTCCTGTTGGAATCATCATAATATCTGGCTGGGG
Seq A exon
GTAAGTTGGTAGCTTTCTGTTTGCTTACCTGTTCTCACATACACAGTTACTATTCATCTCTCTCTCTCTGTCTTTCTCTCTAAACTCTCATTATTATAG
Seq C2 exon
GATTCCTGCTCTCCTTGTTGGTGTTCTTTTGGTAACTGGAAAACATAATGGAGAAAGCATTGACTCAGCCTTCTTTTATGGAAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152421=FAM53=PU(7.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGAAAAAGAGAGAAAGGGTACA
R:
CCATAAAAGAAGGCTGAGTCAATGC
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]