GgaINT0049026 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18090194-18090450:+
Coord C1 exon
chr7:18090194-18090278
Coord A exon
chr7:18090279-18090359
Coord C2 exon
chr7:18090360-18090450
Length
81 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTCATGTTTTGCACTTTCAGAGT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GTTTTTTATCCTTCTCTTTGTTTCTGTTGAGGAAGAGAGAAACACTGAAGATTCCCATTGGATTTATAATCATAGCTGGATGGGG
Seq A exon
GTAAGTTAGCTCAGAGGCTTACCTGTAGGATTGGTGAGAGCAAGCCAAATATGTTACTTTGTTCATGTTTTGCACTTTCAG
Seq C2 exon
AGTCCCAACGCTTCTGGTGGGAATCTTGTTAATAGTTGGTGAACGTAACAGCACTACCATTGACTCTGCCTTTTTCTATGGAAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCTTTGTTTCTGTTGAGGA
R:
TCCATAGAAAAAGGCAGAGTCA
Band lengths:
159-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]