MmuINT0073088 @ mm10
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73363932-73364252:-
Coord C1 exon
chr2:73364168-73364252
Coord A exon
chr2:73364023-73364167
Coord C2 exon
chr2:73363932-73364022
Length
145 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TCCTATGGCCCTGCTTACAGGAT
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCCTTCTAGCAGTTTCTTTGTTTCTTTTAAAGAAGCGCGAGAGCGTTCAGCTCCCGGTGGGAATCATCATCATCTCTGGCTGGGG
Seq A exon
GTAAGTGGTGGCTTCCCGGTGTCCGCTTCCCGGTGTCCGCTTCCCGCTGTCCGCTTCCCGGTGTCCGCATCCCGGTGTCTGCTTCCTGGTGTCCATAGGCAGCTTCTGTTGGCTCACTCTTTCTTTCCTATGGCCCTGCTTACAG
Seq C2 exon
GATCCCTGCTCTCCTTGTGGGCGTGCTTCTGATAACTGGAAAACACAACGGAGACAGCATTGACTCAGCCTTCTTTTATGGAAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762:ENSMUST00000076463:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTAGCAGTTTCTTTGTT
R:
TTTTCCATAAAAGAAGGCTGAGTCA
Band lengths:
170-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types