DreINT0074435 @ danRer10
Intron Retention
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2492033-2493034:+
Coord C1 exon
chr9:2492033-2492114
Coord A exon
chr9:2492115-2492943
Coord C2 exon
chr9:2492944-2493034
Length
829 bp
Sequences
Splice sites
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
3' ss Seq
TTTCCTTCTGTCTTATGCAGTTT
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTCTCATCGTCCTCTCTCTGCTCCTCATGAGAAGTGAAGAGGTGAACTTTAGGCCGGGACTCACTGTGATCACCGGCTGGGG
Seq A exon
GTTAGTAAATTAATTTAATACTAAACAAATTAATAAATTAATACGACTTCTATACCTATCGTTCCTCATTCCCATTTCCCATTCCCTTATATATATAGACACACACACACACACACACACACACACACACACACACACACACATATATACACACACACACACACACACACACACACACACACACATATATATACACACACATATACACACACATATATATATATATATATATATATATATATATATATATATATATAAATATATATATATATATATATACATATATACACATATATACAAATATACACACACACACACACACATATATACACACACACACACACATATATATATATATATACACACACACACATACACACATATATACACACACACACATATATATATACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATACATACACACACATATGTGTGTGTGTGTGTGTATGTATATATAGGAACAATGGGAATGAAGAACAATGGAAATATAAGTCCTAATAATTTATATATAAATGTGTTATATATTACTGTATATTTATATAGTGCATTTCATACACAATGGTAATTTTAAGTGCTTTACATAAACAAAAATATATAAAGATAAGTATAAGTACAAAAAATAAGTAAATGAATGGAACCAGCAAAATATGTTAATTCAAGTCTTTATTGTACCGTAGAGTAGTTTTAAATCCAAAATGTTAAAAAAAATAGTAGCTTGAACTAATGTTTGTGTTTTGTTTCCTTCTGTCTTATGCAG
Seq C2 exon
TTTGCCTTTTTTGGCTGTGAGCGTCCTTCTCCTGTCAGGACACAGAATGCCAGACACCATCGACTCTGCCTTCTTTTATGGAACCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804:ENSDART00000147034:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]