BtaINT0068640 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017124 | GPSM2
Description
Bos taurus G-protein signaling modulator 2 (GPSM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192355]
Coordinates
chr3:34551872-34554524:-
Coord C1 exon
chr3:34554348-34554524
Coord A exon
chr3:34552032-34554347
Coord C2 exon
chr3:34551872-34552031
Length
2316 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTTCTCTCTCAATATTTTAGAAA
3' ss Score
9.98
Exon sequences
Seq C1 exon
GTACAAAACTGGAACAGTGAAATTCTTGCTAAACAAAAGCCTCTTATTGCCAAACCTTCTGCAAAGCTCCTCTTTGTCAACAGACTGAAGGGGAAAAAATACAAAACTAATTCCTCCACTAAAGTTCTCCAAGACACTAGTAATTCCATTGATCACCGAATTCCAAATTCTCAAAGG
Seq A exon
GTATGTTTAAAATAAGTTTTAGAATATTGTGTTTTGAGTTTTTTATATTCATACTGGATTTTTATAATTTATTATTAGTCAATATAAATGTCTTTCTTATTCAAAGTAGTCTTCTGTATTTTCCTATTTTTTCTGTATTTTTCAAAGCTAGAAACTAAAATGTCCTCCATTCAGTTTAGAAGTCAGAACAAATTAAATTCAGATGTTCAAGGATTTTTAAATACTAATTTAAAGTGAGAACTGTCTGCATGCATCAACTTTATTTCTGTTACTAAAATTCTAAGAGTTAAAAACAATTTTGCTTAAAAGTGAGCGTAGGACTCATATTATTAAATATAACAAAATATTTAGAAATTGAAAAATACCATGGGATTACTGGTAAGTATCAGGGGTATCTCTAAGCTACCCTGCTGCTGCTGCTAAGTCACTTCAGTTGTGTCCGACTCTGTGCGACCCCACAGATGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCTCGAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAGGTGAAAAGCGAAAGTGAAGACACTCAGTCGTATCCGACCCTCAGTGACCCCATAGACTGCAGCCTTCCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCTATTGCCTTCTCTGAAGCTACCCTACACTGATAAAAAAAGATCAGATAAATTACAAAGAAGCTACTTCAAATTACCAAGTCCATTTTTCAAGCAGTGAGAACCTTTGAAAAAACTGTGGTAGTCTTTTATTTAACAGATTTCTATTGATCTTGTTGTCAGCATTTTATTTATATCTGCACCCTGCAGTGTTGTTTGCCTTGATTCTATCAGTTTTTTACATGTTTCTTACACATGTATGACTAACAAAAGGAAACATTATGAGGTATATAAAAATGGTCCAGGAATATTTTTGTAGATCCACAGCAGAACTGGAAGGCAATATCTTTGTTCAAGGTTTGAGGTCTTAACCAAGCACAATTAGCCTAACTGAAGATGTCTGTATTTTTGGAGACTTGTTGTCTTTCAGTGTGCAGAATTATGAATTAAGAGGCTTCATGCTTCTAGAGAAAGTCTTGTTAGTGATTAATGCATTTGACTGTAGCTTATACACATACTTACCATTCCCAAACCTCAAGCCCTCTTGTTTTCCTTACTTCAGTAAAAGGGATGCTGTTTGTACACTGTCTCCCAGGCTGGGAACGCAGGCGTCATTCTAGACTCCTCCTCCTTCCCTTCCAGTTAATCCCTAAGAAATCTCTGCTACTGTGTATTAATTCTTAATGTACTACTTTATCTTACCCAAATTTCTGGAAGAGGTACCTGCACTAATCCCTCTCCCTGCATTATTAACCTCTTCAAACCAGGAAGGGCCAGCTTTATTTCTGTACAAAACTGCTTAAAGTTGACTATTCCATGCTCCTCTCATTTTACATAGGATAAGCCTTAATTAGCTTGTTAGTCTGTCATACAGAAGCCTTTGTCTTGGCCTCCTCTTCTCCCTTTCTTCACTACCTGTGCCTGCCCTTCAGTTCATTATCCCCTGAACACTACAAATCTTTGGAATTGCATATTAATCAGTATGAAACATCTTTACCCTGCAAATGCTTATGCTCAGGAACTCAAATATCACGTAAGCTTCTATTTCACCTAAGAATTAATTGCACCCTTCTCCTAGGGCTCATAACATTTTGTGTATATGTACTTCAATAAAGACTATCATTGTGAAAAAATTACCTTTGTTAAACATTAGTCATTTTAGTTTTGAATCTTTCCAAATATAGTATAACAGGTATCCCTCTTTCTCAAGTATTCATTTGAAGTTTATATTTTTTTTCAGGATCTTCAAATCTTTACAGTAAAAGACCTTAGAAGTCACTATATCAAGAAAATATACACGCTTTCTTAGTTTATCAGTTCTGTTTACTTAAATTCTGTTGTAGAATCTAAGAGCTGAACTTGAACCTGGGGCACATGTTCCTATCACTGATATTTGGGTAATTCATTCAGTATCTGTAACAGTTCCCCTAAGTCTGAGGTACACTTATTTAGCTTTAGAAATACAAGGATCAAAAAGTAAAATAACTAGAAATGCTTTTTGTTAGTTGAACTGAAATAACTATTACCAAGTGGTGCCATCTTACACAAAGAAAATGTCAACTTTTTAGTCTAAATCTTCATCCTTTGCATTTGAGGTAGATGATATTGTTTCACTGATGATCTAAGGATAACACTGGAATGTTGAGATTTTTCTCTCTCAATATTTTAG
Seq C2 exon
AAAATCAGTGCAGATTCTATCGGCGATGAAGGGTTCTTTGACCTATTAAGCCGATTTCAAAGCAATCGGATGGATGATCAGAGGTGCTGCTTACAAGAGAAGAACTCTACATCAGCTGCAGCGGCAGCTTCTTCCACTCCCCTCAAAAGGATGCTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017124:ENSBTAT00000022762:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]