DreINT0074565 @ danRer10
Intron Retention
Gene
ENSDARG00000017311 | gpsm2
Description
G-protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
Coordinates
chr2:45639516-45640728:-
Coord C1 exon
chr2:45640555-45640728
Coord A exon
chr2:45639688-45640554
Coord C2 exon
chr2:45639516-45639687
Length
867 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATA
5' ss Score
0.92
3' ss Seq
TTGACTTTGTTTGCCCTCAGCAT
3' ss Score
8.27
Exon sequences
Seq C1 exon
GGTCAGAAGTGGACCAGTGACATCCTCTTCAAGCAGTCCAAATCCTCACTAGCCAAGTCATCTTCAAAGCTATCTTTTGTGAATCGTTTCCGAGGAAAGAAGCACAAACTGCAGAGCAGCTCCAGTAAAATCCTGCAGGATACCAGCAACACACGGGACGCTCCTCAAAGCAAA
Seq A exon
GTAATAAAACCACACGCAATGTACAAAGATAAAGTACTTATTGATAGTACATAATAATAAAGTACAAAGAAAGCCTGGTCAATAAATACTGTATTTACTTCATTAGTTGGAATGCTTGATCTTGTAGAGCAAGTTTAAGTTCAAATTGATTTAAAATTAATCCAAAAAAATTAACACAGACTGCATGACCTTAATTTAATATCCAAACCACTCTTCGCAAATTGAGCGTCTTTTTACACTGTCTGAAATTTCGTATACATCTTTTTTTTTTCTTTTTCGTGTTCATTGTTCTAAAAAATTGTCAAGCATCGTTAGTGTAAAAAAAAAAGGGAAAATAGTACAAAACCATGCAGTAATGCTTATGATCTCCTCTGTCTTAAAAGGGAAGTATTGTATTCATTGAATTGAATTGATCTCAAACAGATGTAGCATTATGTTTTTGCGATGTTCCTCAGGTGGAAAAAATTATTACTATTACTATTAAAACACAGAGCTCAATAAAAAATGAAACCAAGATATCCAATATCACTGCAATTTGATGATGACAAACCTCCAAAAACTTGCCTGATCATTGGGGTGATGCTATCTGGAGCAAAAAATAACATTTCTGTTCTGTCATGTGAAAAATGTTTTGACAAAGTCATGCTCACTGTGCACAGAGCCCCAAAGAAATGTAAAAATGACTCTGAGCTTCAAAATCTTCATTCTCCAGTCCTACTTTTTTATAATCTAATTAGTTTTAGAAACACCATTATATTTTCAGTAGATTAATTTTGTGTAGCAGTGATATTTTTGTATGAATTATGCACTATAAATGTATTCATTATGTAGCATTTTTCTTAAACCTTTGACTTTGTTTGCCCTCAG
Seq C2 exon
CATGGAAGTACAGACATGTTAGGAGACGAGGGCTTCTTTGACTTGCTGAGTCGATTTCAGAGCAACCGGATGGATGACCAGCGCTGTGCCATACAAGATAGCAAGAGCCACCTGTCTGTTAACTCCATCAGCGCTTCTCCACCCACCACACCACCCAGAACCATCAGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017311:ENSDART00000024034:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=39.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGAAGTGGACCAGTGAC
R:
TTCCTGATGGTTCTGGGTGGT
Band lengths:
344-1211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]