MmuINT0073448 @ mm9
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108485590-108489917:-
Coord C1 exon
chr3:108489738-108489917
Coord A exon
chr3:108485744-108489737
Coord C2 exon
chr3:108485590-108485743
Length
3994 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
CTAGATTTTCTTTGTTTTAGAAA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTGCCGAATTGGAACAGTGAAATTCTCGCTAAACAGAAACCTCTCATTGCCAAACCATCTGCAAAGCTCCTGTTTGTCAACAGACTGAAGGGCAAAAAGTACAAAAGCGGCAGCGCCTGCACTAAGGTTCTCCAAGACGCCAGCAACTCCGTGGACCACCGCGCGCCACGCTCCCAGAAG
Seq A exon
GTACGCTTCCGTCCGGAGCGCTGTAAGGCCCACGTGTCGTACTTGTTTCCTTGTATTCATTCAGTTGTTGGTAAGCACATAACATGTCCTAGTGAAAGAGTGTGTCTCTCTCAGGCTTTCCTGCTCCTCAGCTAGGGCCCGTTCTGTTCATAGAGAAGTTGTTCTCTTGTTTTGGACAGTAGTTATTACTGATTTAAGTCACTGTCTGCAAAAGTACTGTTTCTCTTACTGTTGTTCTCTAGTAAGACTAACTCATGTTTGAAGCCAGAAAAACACTGACTGCAGATTCAGGGATTTTTTTTTTTTTTTTTTTTTTTTTTAATGAATCAGACCGTGTTACAGCACTGTCTCACCTAGTGGAAACAGACACCAGGGGATTTTTTTTAATCTTCATGGATTTTTAAGCAAACACTATCTCAGAGAAAAAAATTTTGGTAGCATCAGCTTTTTTATTTTATTTCTTTACAGTCTAGTCGTTACCCCCTCCTGGTCTACCCTCCCACAGTTCCTCATCCCACTCCTCCTACCCCCTGTCTCCAAGAGGATGTCTGCTCCACCCACCAGGCTTCCCTACTCAAGTCTCTCAAGGGTTTGGTGCATCTTCTTTCACTGAGGGCAGACCCGGCAGTCCTCTGCTGTATATGTGTCAGGGGCCTTGGACCAGCTGCTGTATGCTGCCTGGTTGGTGGCTCATTGTCAGAGAGATCTCAGGGGTCCAGGTTAGTTGAGACTTCTGTCTTTCTATGGGGTTGCCCTCTTCCTCAGCTTCTTCCAGCTTTTCCCTAATTCAACCACAGGGGTCCCCGACTTGTACATATCTGCATCTAACTCTTTCAGCTGCTTGTTGGGCCTCTCAGAGGACAGCCATGAGCATCAGCTTTTATTTCATCTTATTATTGGAACCTTCACACACACACACCCCATTTCCACTCCCCAAGTCAGGGTTTCTCTGTGTAGCCTTGACTGTCCCGGAACTCGCTCTAGACCAGGTTGGCCGGGGACTCAAAGCTTCACCTGCCTCTGCCGCCCGAGGGCTGGGATTAAAGGGGTGCGCCACTACTGCCTGGCCATGACCACTTCCATATTTAGACATTTATCTTAGGGTTTCTATTGCTGTGAATAGGTGCTGTGACCCTGGCAACTCTTAAAGAGGAAAACATTTAATTGGGGCTGACTTACAGGTTCATTATCATCATGGCGGGAAGCATGGCAGCATGCAGGCAGACATGGTGCTGGAGAAGGAGCTGAGAGTTCTACATCTGAGTGGGCAGTCATCAGGAAGAGAGAGACAGACTGGGCCTTGCTTGAGTGTCTGAGACCTCAAAGCCTACCCGCAACAACCCTAACCGAGAGACTTTCTCCAGCAAGGCCACACCTCCTAATAGTGCCGCTCTCTGTGGGCCTACGGGGCTATTTTTATTCAGGTTATCACAAAAGTACACCAGTTTATTGAATTTAACATACTCAGAAATAAAGGCACCATTGACTTAATGGTCATTATTAAAGAACTCTTTAAGCTTACCTAGCTATCCTCTATTCTGATAAACAGGATCAAACTAAGTCAAAAAGAACATTATTATAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCCTGGGACTAAACCACCAACCAAGGAAAACACACAGAGGGACTCATGGCCCAGCTGCCTATGCAGCAGAGAGTGGCCTAGTTGGTCATTAATGGGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGCAGGAGTTAGGTGGGTTGGTGAGCAGGGGGAGGGGGAAGGGGGTTAGGGGGCTTTCGGAGGGGAAACTAGGAGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAGTATAAATAAATAAATAAATAAATAAGTAGATAGATGGATAGATAAATAGGTAAACTAAGTTATAATTAAAAAAAAAAAACAAAACATTCTTCACCAAGTACCATTTTTAGTCAAGGAAGGTCTTTTCAAAAAACAGAATTTCAGGGGTTTCAATCAGAATTTCGGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGTGCAAGACCCTGGGTTCAGTGCTCAGCTCTGAAAAAAAAAAAAAAAAAAAGACAAAATTTCACTAATGGCTATATACCCCTTGAAGTGTTTTTTCAATGCTTTTTGGCTAATAAACGGAAAAACTATAGGGCTGGGTATAGAGTGACTGTCCAGGGATGCAGAACTAGGGCTCTAGGCTGTCTTCAGCAGGCACTCTGAACAGAGCTAAAAGCTCTGATCTTTTGAAAGCTACTGTGTTTTTTTTTCATTTGGGGGCTGTTTTGAGACAAGGATTTACTCCCTGTGGACCAGGCTGGTTAGTATTACAGATATTGTCACCATGCCCAGCATTGTACTATGTTTTTGATGTTCAAAATTGTACATTACAGGCTTTTTGTACCTAGAGCAAGGTCTTGGTGATGACGTATTGGCTATAGCTTAAGCACTCCATTCGCAAACATCAGATTCAGCGTAAGTCTGGAGTCAACTACTCCTCCCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAGACATCATGACCAAGAAGCAAGTGGGGTAGGAAAGGGTTTATTCAGCTTACACTTCCACACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGGGCTGATGCAGAGGCCACGGTGGGATGTTACTTACTGGCTTGTTTCCACTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAAGAATACCAGTCCAGGGATGGCACCACCCACAAGGGGCCTTTTCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGTATCTCATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTACATCCCCTGACTCATTTTAGGATGCCATGCTGTGTCTCCTAGGAAGCTAGGTGTTACTCAGTTCTCTTTCCTGCATTAACCACACTTGATCGTTTTGTTCTTTAGATTTGAATTTCTCACTTCTAAAACATTCTCTGTACCAAGTCTTTTTCTAACACTTAACCCCTCACGTAGACTTGTAGACCAGACACTTGAACGTTTGTTTCTGCTGCTCGGATCCACTGGAGGGGCCAGCGTCTGGGCAGGAGTGTTAGAACTAGCTGTACAGCCACCGAAGGTCACAAAGCTCACAGCGGTTTTGCCTGAGAAGACTGATGCTTTCTTGTCTTGGCTTTTTTTTTTTTTTCTCTTTTTGTTGTTGTTGTTGTTTTTAGTTTTGGTTTTATTGGGTTAGTTGTTTTTGAGACAGAGTTTCTCTGTGTAGCCTTGGCTGTTCTAGAACTCTCTGTTGACCAGGTTGGCCTCAAACCCAGAGATATACCTGGCTCTGCGCCTCCCTAGTGCTGGGATTTAGAAATACACCACCACTGCTAGGCTTTTAAGAACGATTGATTGATTGATTGATTGATTGATTGGGGTGTTTTGCCTGCTTGTATATCTGCACACCAGAAGAGGTAATTAGATCCCATGAGTATAGTTAGAGATGGCTGTGAGCCATGTGGGTGCTGAGATTTGAACTCAAGATCTCTGGAAAGACAGCCACTGTTCTTAACCAGCCCCTGGGATTCTTCATTTTTGGTTCTAGAAGCAGAGATTATAGTATGAGTGTCCAGTCCAGGCCTCAGATATGTTTTATTGGCCTAAGAAATACAGGAATTAAAAGTTAAATAAATAAAAATGGCTTTTTATGGGGTGTATACGGGAGCATTTTATTACCAATTGCCACTTAAGCTCTTTTTTTAAATAAAAGGCCAGTTTTTAAAATCTGTATCCTTTGCCTTTTCTGTTTAACTACATCATGGTGTTCATTGATGACCTAAGGCCAAAGAGGGATAATTAAACATACTAGATTTTCTTTGTTTTAG
Seq C2 exon
AAAATCAGTTCAGACACGATTGGAGATGAAGGATTCTTTGACTTGCTAAGGCGATTTCAGAGCAACAGGATGGATGACCAGAGGTGCCACTTACAAGGAAACTGTCGCACAACATCCACAGCAGCTGCTTCTGCTACCCCCAAGTTGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883-Gpsm2:NM_029522:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: