BtaINT0068648 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017124 | GPSM2
Description
Bos taurus G-protein signaling modulator 2 (GPSM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192355]
Coordinates
chr3:34563293-34564650:-
Coord C1 exon
chr3:34564542-34564650
Coord A exon
chr3:34563423-34564541
Coord C2 exon
chr3:34563293-34563422
Length
1119 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
ATAAATGCTTGTGGTTGTAGGTT
3' ss Score
6.12
Exon sequences
Seq C1 exon
AATTGGTGAAGGAAGAGCATGTTGGAGCTTAGGAAATGCATACACAGCTCTAGGAAATCATGACCAAGCAATGCATTTTGCTGAAAAACACTTGGAAATTTCAAGAGAG
Seq A exon
GTATGAAACTAAAAAATGGTTATCTGTGCTTATCTGTGCTACTGTGATTCACAGATCTGCAGCCCTATTATTTCTCTAGGATCCTGCTATATGGCCAAGTAATAAATTTAATTATATATTGTTCTCTAGGCATAAGAACTGAAAGCATTTTAAGATACAGATCAGAGGTATGTTTGCACTGGCCTTGATGTAGGATAGAGGAGAGGATTACTAACCTATCTCCACTGTCCCCCATCTCTTTGTGGAAAAGTAGCATGGTATGAAAGGAGGAAGATGGCTTTTAGAATCAAGGACTGGTTCCTGTTACAGTTCTGCCATTTGCTGGCTGTTTGAGCTTGGAAACCTTTTCTGAGCATCATTTCTTTCATCTGTAAAATGGGAATAATAACTGCTTTGCAAATTGTTATAAGGATTAGAGAGAAAGTATATAAAAGTGCCTAGTGTGATGTCTAGTGCTGGTTTAATACTGCTACTACAGTATGGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCAGACACGACTGAGCGACTTCACTTTCACTTTTTACTTTCATGCATTGGAGGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGTGGGGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCAGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGTATGGAAATAAATATAAGGAAATTTTATTCATGTGATGCCAAGTTAACATGTCACAGAATAATCTACATTATTATTTAATTGATCACAGAGATTGAGAGCAGTCTAATATTTAGAGAAGAGTTGATAGAATATATTCATTAGTCCTACTGCCATAGTTTAGAAACTTTCCTTTTCTTTCTTCTTTAAAATAGTATTAATGGAAAAAACCATTTCATTTATAGTATTATAATTCTAAAATAACTATTTTCATTTCTCCATATTTTCTTCCAGTTGTAGGTTCACAATATTTTCAACTAATCTTCACCATTCTTTACTTTAAATACTACTCTAAATATATAAATAAATGCTTGTGGTTGTAG
Seq C2 exon
GTTGGAGATAGAAGTGGTGAGCTTACAGCACGACTGAATCTCTCAGACCTTCAAATGGTTCTTGGTCTGAGCTACAGCACAAACAATTCAATGATATCAGAAAATATTGAAATTGATAACAGTTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017124:ENSBTAT00000022762:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(55.2=86.5)
A:
NA
C2:
PF134241=TPR_12=PD(41.4=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGGAAGAGCATGTTGG
R:
TCTGATATCATTGAATTGTTTGTGCT
Band lengths:
207-1326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]