HsaINT0071949 @ hg38
Intron Retention
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr1:108903126-108904254:+
Coord C1 exon
chr1:108903126-108903234
Coord A exon
chr1:108903235-108904124
Coord C2 exon
chr1:108904125-108904254
Length
890 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TATAAATGTTTGTGTTGTAGGTT
3' ss Score
10.18
Exon sequences
Seq C1 exon
AATTGGTGAAGGAAGAGCATGTTGGAGCTTAGGAAATGCATACACAGCACTAGGAAATCATGATCAAGCAATGCATTTTGCTGAAAAGCACTTGGAAATTTCAAGAGAG
Seq A exon
GTATGAAACTAAAAAAAATGCTGTCTGTGCTATTGTAATTTACAAATTAGAGGTTGGGGGAGGGAACCCTATTTCTCTAGATTGATCATGTGGCTGAATAATAAATTTGATTATATATCATTCTCTTGGCATAAGAACCCCAGAAAGCATTTTGAGGTACAGATCACAGTTATGTTTGTATTGGCTTTCATGTAGGAAGACAGGAAAGTAAGGCCGGGCATGGGGAAGTGGAAGGAGAGTACTAAAATATGCCCCTACTCTACCCGCATCTCTACATGGAGAAGTAGCATGGTATTGAAGGAAAAGCATGGTTCTTAGAATTAAGGACTGCTTCCTGTTGTAGTTCTGCCACTTACTGGCTATTTGAGCTTGGAAACCTTTTCTGAGCCTCAGTTTCTCTCATCTGCATAATGGGAATAATAATATCTACCTTGCAAAGTGTTATAACGATTAGAGCTAATGTATATTAAAAGTGCCTAGCAAAATGTCTGGTGCTGGCTTAATAAACATTATTATTATACTATGGGAATAAAATATTCTAAGAAAATTTTATTCATATACCAAGTTAATGTGTCCAGGATAATCTACATTATTACTTAGTATGATTCCAGAGAACAAGAGCAATCTAATGTTTAGAGAACTAAAGAATTAAAAGAATACAATTAGCTGTCCTATTGTGATATTTTAGAAGCTTGCTTTTTCTTTCTGTATTCTTTAAGACAACTATTAATGGAAAAAAATTTTCATTCATTCATAGTCTCATAATTCTAATATAACTATTTTCATTTCTCTATATTTTCTTCTAGTTTTAGGTTCACTACATTTACAAATAATCTTCACCATTCTTTCTCTTTAAATACTACTCTAAAATATAAATGTTTGTGTTGTAG
Seq C2 exon
GTTGGGGATAAAAGTGGTGAACTAACAGCACGACTTAATCTCTCAGACCTTCAAATGGTTCTTGGTCTGAGCTACAGCACAAATAACTCCATAATGTCTGAAAATACTGAAATTGATAGCAGTTTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957:ENST00000406462:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(55.2=86.5)
A:
NA
C2:
PF134241=TPR_12=PD(41.4=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGGAAGAGCATGTTGG
R:
TCAGACATTATGGAGTTATTTGTGCT
Band lengths:
207-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development